Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 2.5e-164 582.0 292 100.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.8e-147 524.6 288 88.2
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 1.4e-146 523.1 292 87.0
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.1e-146 521.9 292 87.7
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.5e-145 518.1 292 87.3
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 9.9e-145 516.9 292 85.6
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.9e-144 515.4 292 84.9
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.8e-144 515.0 292 85.3
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 3.8e-144 515.0 292 83.9
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.2e-143 511.9 292 83.9
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.5e-143 511.1 292 83.9
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 7.1e-143 510.8 292 83.6
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 9.3e-143 510.4 316 79.7
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 2.1e-142 509.2 292 85.6
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 2.1e-142 509.2 292 83.9
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 2.7e-142 508.8 292 83.2
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 2.7e-142 508.8 292 83.2
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 2.7e-142 508.8 290 84.1
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 6.0e-142 507.7 292 84.2
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 7.9e-142 507.3 292 84.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.3e-141 506.5 292 83.6
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.3e-141 506.5 292 83.2
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.8e-141 506.1 292 83.6
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.8e-141 506.1 292 84.6
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.9e-141 505.0 292 83.2
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 6.7e-141 504.2 308 78.9
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 6.7e-141 504.2 288 82.6
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.1e-140 503.4 290 82.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.1e-140 503.4 292 82.9
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 4.3e-140 501.5 292 82.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 5.6e-140 501.1 290 84.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 7.4e-140 500.7 290 84.1
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.3e-139 500.0 288 82.3
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.1e-139 499.2 284 84.9
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.8e-139 498.8 289 82.4
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 4.8e-139 498.0 292 82.5
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 6.2e-139 497.7 292 81.2
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 8.1e-139 497.3 292 81.2
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 8.1e-139 497.3 292 80.5
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.8e-138 496.1 292 81.5
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 4.0e-138 495.0 292 81.2
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 6.9e-138 494.2 292 80.8
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 6.9e-138 494.2 292 81.8
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 3.4e-137 491.9 292 81.8
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 5.8e-137 491.1 290 81.7
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 5.8e-137 491.1 292 80.8
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.0e-136 490.3 292 80.1
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.7e-136 489.6 292 81.5
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.7e-136 489.6 292 81.5
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.2e-136 489.2 292 81.2
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 2.9e-136 488.8 292 81.2
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.8e-136 488.4 292 81.5
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.1e-135 486.9 292 78.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.9e-135 486.1 292 80.5
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.2e-135 485.3 292 80.5
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 3.2e-135 485.3 292 80.8
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.2e-135 485.3 292 78.1
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 3.2e-135 485.3 301 77.7
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 7.1e-135 484.2 292 79.5
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 9.3e-135 483.8 292 80.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.2e-134 483.4 292 77.7
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.6e-134 483.0 292 79.5
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.5e-134 481.9 292 78.1
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 7.9e-134 480.7 292 79.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.8e-133 479.6 292 77.1
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.1e-132 476.9 284 81.3
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.5e-132 475.7 290 78.6
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.3e-132 474.9 388 63.9
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 5.7e-132 474.6 292 78.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.3e-131 473.4 292 78.8
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 4.8e-131 471.5 290 78.6
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 6.3e-131 471.1 324 72.8
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.1e-130 470.3 292 76.0
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-130 470.3 290 76.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.1e-130 470.3 290 77.6
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 1.8e-130 469.5 292 76.0
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.8e-130 469.5 292 75.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.8e-130 469.5 290 77.2
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 4.1e-130 468.4 292 78.1
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 4.1e-130 468.4 290 76.6
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 5.3e-130 468.0 290 76.6
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 6.9e-130 467.6 287 78.7
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 6.9e-130 467.6 290 76.6
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 6.9e-130 467.6 290 76.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 9.0e-130 467.2 290 76.6
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-129 466.8 290 76.6
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-129 466.8 290 76.6
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.2e-129 466.8 290 76.6
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.2e-129 466.8 290 76.6
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.5e-129 466.5 288 76.7
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.5e-129 466.5 288 76.7
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.5e-129 466.5 292 75.7
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 3.4e-129 465.3 290 76.2
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-129 465.3 290 76.2
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 3.4e-129 465.3 290 76.2
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 3.4e-129 465.3 290 76.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 3.4e-129 465.3 284 78.2
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 2.2e-128 462.6 292 74.3
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 5.0e-128 461.5 308 74.0
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 6.5e-128 461.1 290 75.5
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 6.5e-128 461.1 290 75.5
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 8.4e-128 460.7 290 75.5
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 8.4e-128 460.7 290 75.5
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 4.2e-127 458.4 444 57.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.5e-127 458.0 335 68.1
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 7.2e-127 457.6 290 75.2
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 9.3e-127 457.2 280 77.5
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 9.3e-127 457.2 304 77.3
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 7.9e-126 454.1 334 68.0
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.3e-124 448.7 284 72.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.3e-123 444.5 286 72.7
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 4.6e-118 428.3 309 68.9
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 5.1e-117 424.9 290 71.7
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.6e-110 403.3 243 81.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.7e-102 375.2 206 87.4
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.3e-100 369.0 219 81.3
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.9e-95 353.2 206 82.5
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.9e-95 353.2 205 81.5
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 2.1e-94 349.7 281 61.2
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.8e-90 336.7 286 57.7
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 8.5e-88 327.8 283 54.1
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.6e-86 323.6 286 53.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 6.1e-86 321.6 226 72.1
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 6.8e-85 318.2 282 53.5
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 5.9e-81 305.1 182 79.7
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 8.9e-77 291.2 279 52.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.2e-58 229.6 125 90.4
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 4.6e-57 225.7 280 43.6
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 4.0e-53 212.6 212 56.6
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 4.3e-47 192.6 291 36.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 3.5e-41 172.9 282 37.6
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 3.8e-35 152.9 138 60.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.4e-26 124.4 81 74.1
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.9e-23 114.0 113 57.5
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 7.4e-23 112.1 58 89.7
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.3e-22 111.3 65 80.0
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.1e-22 110.5 59 86.4
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 6.2e-22 109.0 59 86.4
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.0e-19 101.7 180 37.8
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 3.8e-19 99.8 105 47.6
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.9e-18 97.4 57 80.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 7.6e-12 75.5 53 71.7
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 7.9e-09 65.5 42 76.2
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.1e-07 61.6 37 78.4


User provided reference genes

Program Settings