Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 2.4e-26 122.1 100 100.0
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 9.6e-15 83.6 55 63.6
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 1.2e-12 76.6 55 65.5
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 4.5e-12 74.7 55 65.5
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 5.8e-12 74.3 54 63.0
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 5.8e-12 74.3 54 63.0
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 5.8e-12 74.3 55 61.8
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 1.0e-11 73.6 58 63.8
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.3e-11 73.2 54 63.0
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 6.5e-11 70.9 56 67.9
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 6.5e-11 70.9 56 67.9
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 6.5e-11 70.9 56 67.9
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 6.5e-11 70.9 54 59.3
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.9e-10 69.3 54 63.0
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 5.5e-10 67.8 58 53.4
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 5.5e-10 67.8 58 53.4
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 5.5e-10 67.8 54 64.8
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 5.5e-10 67.8 49 63.3
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 7.1e-10 67.4 62 59.7
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 9.3e-10 67.0 55 56.4
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 1.2e-09 66.6 54 55.6
CANSAT01G2831 Cannabis sativa HOM05D007427 ORTHO05D006413 2.1e-09 65.9 55 60.0
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 2.7e-09 65.5 66 54.5
Cc01_g17390 Coffea canephora HOM05D007427 ORTHO05D006413 4.6e-09 64.7 55 50.9
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 4.6e-09 64.7 56 55.4
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 4.6e-09 64.7 54 59.3
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 6.0e-09 64.3 56 53.6
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 7.9e-09 63.9 54 57.4
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 1.0e-08 63.5 59 52.5
TAR362G1030 Trochodendron aralioides HOM05D007427 ORTHO05D006413 1.3e-08 63.2 45 68.9
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 1.8e-08 62.8 55 58.2
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 2.3e-08 62.4 50 56.0
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 2.3e-08 62.4 48 58.3
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 5.1e-08 61.2 71 42.3
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 6.7e-08 60.8 56 53.6
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 6.7e-08 60.8 54 53.7
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 6.7e-08 60.8 54 53.7
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 8.7e-08 60.5 70 42.9
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 1.1e-07 60.1 56 55.4
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 1.5e-07 59.7 55 56.4
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 1.5e-07 59.7 54 53.7
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 1.9e-07 59.3 51 52.9
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 2.5e-07 58.9 68 45.6
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.5e-07 58.9 68 44.1
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 3.3e-07 58.5 51 51.0
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.3e-07 58.5 70 47.1
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.3e-07 58.5 68 44.1
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 3.3e-07 58.5 68 44.1
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 4.3e-07 58.2 54 48.1
Gohir.A08G193800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.3e-07 58.2 68 44.1
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 4.3e-07 58.2 70 47.1
Sabra02G0191600 Salix brachista HOM05D017908 ORTHO05D006413 4.3e-07 58.2 45 55.6
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 7.4e-07 57.4 56 55.4
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 9.6e-07 57.0 53 50.9
Duzib138G1712 Durio zibethinus HOM05D007427 ORTHO05D006413 9.6e-07 57.0 41 70.7
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 9.6e-07 57.0 54 44.4
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 9.6e-07 57.0 54 50.0
Nn3g19877 Nelumbo nucifera HOM05D007427 ORTHO05D006413 9.6e-07 57.0 55 50.9
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 9.6e-07 57.0 68 44.1
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 1.3e-06 56.6 54 50.0
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 1.3e-06 56.6 47 51.1
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 1.6e-06 56.2 54 48.1
Potri.002G252200 Populus trichocarpa HOM05D007427 ORTHO05D006413 1.6e-06 56.2 45 55.6
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 2.1e-06 55.8 54 48.1
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 2.1e-06 55.8 56 53.6
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 2.8e-06 55.5 54 48.1
Glyma.13G130600 Glycine max HOM05D007427 ORTHO05D006413 3.7e-06 55.1 54 51.9
AL7G23430 Arabidopsis lyrata HOM05D008344 ORTHO05D006413 4.8e-06 54.7 55 56.4
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 4.8e-06 54.7 55 49.1
Gorai.001G183600 Gossypium raimondii HOM05D007427 ORTHO05D006413 6.2e-06 54.3 68 47.1
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 6.2e-06 54.3 60 48.3
AT4G29030 Arabidopsis thaliana HOM05D008344 ORTHO05D006413 8.2e-06 53.9 55 56.4
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 8.2e-06 53.9 78 38.5
Manes.13G043400 Manihot esculenta HOM05D007427 ORTHO05D006413 8.2e-06 53.9 49 55.1
Nitab4.5_0001657g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 8.2e-06 53.9 54 53.7


User provided reference genes

Program Settings