Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 0.0e+00 1341.6 664 100.0
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.6e-310 1068.1 669 79.2
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.4e-306 1055.8 678 78.3
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 8.5e-293 1010.0 667 75.4
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.5e-289 999.2 695 72.7
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 7.4e-289 996.9 658 74.5
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 8.2e-288 993.4 658 74.2
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.2e-283 979.5 661 73.4
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.0e-282 976.5 655 72.5
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 3.0e-282 974.9 661 73.8
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.4e-281 971.5 661 73.1
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.7e-280 968.0 665 71.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 9.1e-279 963.4 643 72.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 3.2e-276 954.9 657 71.4
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 3.2e-276 954.9 671 71.1
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 3.6e-275 951.4 666 71.2
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.0e-274 949.9 656 71.0
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.7e-273 944.1 675 69.5
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.3e-272 943.0 656 70.6
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.7e-272 942.6 587 78.0
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 3.7e-272 941.4 667 71.8
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 6.3e-272 940.6 667 71.8
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.4e-271 939.5 667 72.1
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.7e-270 935.3 665 71.1
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 4.5e-270 934.5 660 69.5
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 6.6e-269 930.6 666 68.8
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 2.8e-267 925.2 661 69.3
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 4.7e-267 924.5 662 69.5
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 6.8e-266 920.6 668 68.1
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.2e-265 919.8 684 67.8
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 4.4e-265 917.9 667 69.3
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.9e-264 914.4 656 69.4
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 5.4e-263 911.0 640 72.7
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 9.2e-263 910.2 671 68.9
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.2e-262 909.8 668 69.5
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.2e-262 909.8 661 69.4
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.6e-262 909.4 663 68.8
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 1.3e-261 906.4 663 68.6
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 5.0e-261 904.4 667 69.9
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 5.0e-261 904.4 647 70.2
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.9e-260 902.5 662 67.7
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 7.3e-260 900.6 640 69.2
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.8e-259 898.7 666 69.5
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.7e-259 897.9 663 68.3
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 6.1e-259 897.5 664 69.3
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 3.1e-258 895.2 667 67.5
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 9.8e-257 890.2 657 68.9
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.7e-254 882.1 612 70.4
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.0e-253 880.2 652 68.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.5e-252 876.3 662 66.5
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.5e-252 876.3 663 67.1
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 5.6e-252 874.4 655 66.9
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 5.6e-252 874.4 666 65.0
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 7.3e-252 874.0 636 69.3
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 9.5e-252 873.6 658 67.3
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.2e-251 873.2 670 65.8
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 2.1e-251 872.5 640 68.4
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.4e-250 869.8 671 65.7
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 2.3e-250 869.0 670 66.6
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 3.1e-250 868.6 639 68.1
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.1e-250 868.6 645 67.9
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 8.9e-250 867.1 655 66.9
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 1.2e-249 866.7 644 68.8
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.3e-248 863.2 668 65.4
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 1.7e-248 862.8 635 67.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 1.7e-248 862.8 584 72.4
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.7e-248 862.8 656 67.1
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 2.9e-248 862.1 658 65.2
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 3.7e-248 861.7 705 64.1
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 4.9e-248 861.3 668 65.1
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.1e-247 860.1 662 67.5
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 1.9e-247 859.4 640 67.7
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 3.2e-247 858.6 664 65.8
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 9.2e-247 857.1 641 67.7
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 3.5e-246 855.1 662 64.4
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 1.0e-245 853.6 669 64.7
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 5.1e-245 851.3 669 64.6
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 6.6e-245 850.9 657 64.5
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 2.1e-243 845.9 666 64.6
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.4e-242 843.2 665 63.6
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.4e-242 843.2 647 65.1
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 3.1e-242 842.0 658 64.9
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 4.9e-240 834.7 645 64.0
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.2e-238 830.1 659 63.7
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 2.7e-238 828.9 659 63.6
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 4.6e-238 828.2 608 68.9
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 6.0e-238 827.8 661 63.4
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.0e-237 827.0 661 63.5
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 3.4e-233 812.0 659 63.1
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 7.6e-233 810.8 665 62.0
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 7.6e-233 810.8 582 68.9
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.3e-232 810.1 669 62.3
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.2e-232 809.3 659 63.0
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.2e-230 803.5 659 62.8
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.2e-230 803.5 584 68.2
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.5e-230 802.0 652 62.4
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 5.6e-228 794.7 663 62.6
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.5e-217 760.0 646 58.7
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 5.5e-207 724.9 610 61.0
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 7.4e-204 714.5 569 62.6
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 2.8e-195 686.0 558 61.1
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 6.5e-184 648.3 584 57.0
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.7e-179 633.6 581 55.9
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.1e-167 594.3 506 60.3
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 7.5e-164 581.6 688 47.2
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.7e-161 571.6 593 51.3
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.1e-159 567.8 662 49.4
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.1e-154 549.7 578 52.2
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 5.6e-151 538.9 434 60.1
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.0e-140 503.8 394 68.3
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 6.0e-137 492.3 531 48.6
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 1.2e-129 468.0 639 42.6
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.4e-125 454.5 834 36.7
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 2.0e-116 424.1 394 55.8
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 8.7e-104 382.1 516 40.9
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 7.4e-95 352.4 201 81.1
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 5.7e-87 326.2 281 60.9
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 6.7e-80 302.8 324 52.2
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 3.8e-75 287.0 227 63.0
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.3e-70 271.9 633 33.0
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 2.2e-70 271.2 219 64.4
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.2e-65 255.4 404 43.1
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 8.8e-64 249.2 208 59.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.0e-56 224.2 662 29.9
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.0e-55 221.5 671 28.6
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 5.7e-55 219.9 676 30.0
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.4e-53 214.5 145 75.2
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.2e-52 212.2 172 65.7
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.7e-46 191.8 278 41.4
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.7e-46 191.8 278 41.4
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 3.7e-46 190.7 169 59.2
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 3.5e-44 184.1 121 74.4
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.2e-39 169.1 144 56.9
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-35 153.3 283 36.0
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.9e-34 151.8 140 58.6
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 4.3e-34 150.6 110 63.6
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.8e-32 143.3 179 42.5
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-30 139.0 241 36.9
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.3e-30 139.0 109 71.6
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-30 137.5 241 36.5
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.7e-30 137.5 241 36.5
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-30 137.5 241 36.5
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.7e-30 137.5 241 36.5
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.1e-24 119.4 166 44.6
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.2e-23 115.9 168 41.7
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.0e-23 115.2 168 41.7
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.6e-23 114.8 168 41.1
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.5e-23 113.2 163 42.3
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 7.8e-20 103.2 62 85.5
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 6.6e-19 100.1 62 83.9
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 6.6e-19 100.1 111 46.8
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 3.7e-14 84.3 70 60.0
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 3.2e-13 81.3 70 57.1
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 5.4e-13 80.5 50 74.0
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.2e-09 69.3 40 72.5


User provided reference genes

Program Settings