Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19187 Davidia involucrata HOM05D007399 ORTHO05D009341 2.9e-137 491.9 245 100.0
Ciclev10022115m.g Citrus clementina HOM05D007399 ORTHO05D009341 1.8e-59 233.4 222 54.5
Thecc.01G222700 Theobroma cacao HOM05D007399 ORTHO05D009341 1.0e-57 227.6 237 54.9
Actinidia09475 Actinidia chinensis HOM05D007399 ORTHO05D009341 8.6e-57 224.6 200 59.5
QL09p052198 Quercus lobata HOM05D007399 ORTHO05D009341 5.5e-56 221.9 226 53.1
TAR362G0473 Trochodendron aralioides HOM05D007399 ORTHO05D009341 9.5e-56 221.1 231 55.8
Hund05568 Selenicereus undatus HOM05D007399 ORTHO05D009341 2.8e-55 219.5 229 53.3
Manes.13G046300 Manihot esculenta HOM05D007399 ORTHO05D009341 4.7e-55 218.8 233 52.4
Rhsim01G0254900 Rhododendron simsii HOM05D007399 ORTHO05D009341 8.0e-55 218.0 285 48.8
Actinidia23717 Actinidia chinensis HOM05D007399 ORTHO05D009341 4.4e-53 212.2 232 52.6
Peaxi162Scf00398g00810 Petunia axillaris HOM05D007399 ORTHO05D009341 7.5e-53 211.5 231 50.2
Cc01_g16850 Coffea canephora HOM05D007399 ORTHO05D009341 1.3e-52 210.7 229 51.1
Lj2A1128G40 Lonicera japonica HOM05D007399 ORTHO05D009341 2.2e-52 209.9 208 54.3
Nitab4.5_0000045g0320 Nicotiana tabacum HOM05D007399 ORTHO05D009341 2.4e-51 206.5 227 52.0
Haze_24850 Corylus avellana HOM05D007399 ORTHO05D009341 2.0e-50 203.4 183 60.1
Gohir.A11G139200 Gossypium hirsutum HOM05D007399 ORTHO05D009341 3.5e-50 202.6 232 49.6
Phvul.010G020400 Phaseolus vulgaris HOM05D007399 ORTHO05D009341 5.9e-50 201.8 232 48.7
Prupe.8G200700 Prunus persica HOM05D007399 ORTHO05D009341 5.9e-50 201.8 222 51.4
Nn1g07919 Nelumbo nucifera HOM05D007399 ORTHO05D009341 7.8e-50 201.4 145 70.3
Nitab4.5_0000345g0070 Nicotiana tabacum HOM05D007399 ORTHO05D009341 2.9e-49 199.5 225 51.6
Gohir.D11G145400 Gossypium hirsutum HOM05D007399 ORTHO05D009341 9.5e-48 194.5 232 48.3
Oeu037382.1 Olea europaea HOM05D007399 ORTHO05D009341 1.2e-47 194.1 187 54.5
ECA248G2789 Erigeron canadensis HOM05D007399 ORTHO05D009341 3.6e-47 192.6 228 49.1
Cfa002599 Carpinus fangiana HOM05D007399 ORTHO05D009341 8.0e-47 191.4 223 52.0
Duzib133G1013 Durio zibethinus HOM05D007399 ORTHO05D009341 8.0e-47 191.4 233 48.9
GSVIVG01003279001 Vitis vinifera HOM05D007399 ORTHO05D009341 8.0e-47 191.4 243 48.6
HanXRQChr01g0015211 Helianthus annuus HOM05D007399 ORTHO05D009341 1.0e-46 191.0 224 50.9
Ah.08g214480 Amaranthus hybridus HOM05D007399 ORTHO05D009341 1.4e-46 190.7 233 47.2
Gorai.007G155900 Gossypium raimondii HOM05D007399 ORTHO05D009341 4.0e-46 189.1 239 46.4
QL09p053453 Quercus lobata HOM05D007399 ORTHO05D009341 9.8e-45 184.5 232 47.0
Lsat_1_v5_gn_5_180581 Lactuca sativa HOM05D007399 ORTHO05D009341 1.1e-43 181.0 231 48.5
VMungo0331G1622 Vigna mungo HOM05D007399 ORTHO05D009341 2.4e-43 179.9 224 46.4
Sabra02G0185900 Salix brachista HOM05D007399 ORTHO05D009341 5.4e-43 178.7 207 51.7
CAN.G3.2 Capsicum annuum HOM05D007399 ORTHO05D009341 9.2e-43 177.9 225 50.2
Potri.002G244400 Populus trichocarpa HOM05D007399 ORTHO05D009341 1.6e-42 177.2 161 58.4
QL09p053062 Quercus lobata HOM05D007399 ORTHO05D009341 3.5e-42 176.0 150 60.0
ClCG09G008880 Citrullus lanatus HOM05D007399 ORTHO05D009341 4.6e-42 175.6 234 44.0
RcHm_v2.0_Chr6g0284361 Rosa chinensis HOM05D007399 ORTHO05D009341 4.6e-42 175.6 233 47.6
Migut.D02494 Erythranthe guttata HOM05D007399 ORTHO05D009341 5.9e-42 175.3 225 45.3
CiPaw.03G147600 Carya illinoinensis HOM05D007399 ORTHO05D009341 1.0e-41 174.5 187 52.4
MD05G1173200 Malus domestica HOM05D007399 ORTHO05D009341 1.3e-41 174.1 232 46.1
FAN15G3119 Fragaria x ananassa HOM05D007399 ORTHO05D009341 3.9e-41 172.6 231 47.6
Lj3g0000647 Lotus japonicus HOM05D007399 ORTHO05D009341 8.6e-41 171.4 229 45.4
Sopen09g023130 Solanum pennellii HOM05D007399 ORTHO05D009341 8.6e-41 171.4 224 49.1
TWI18G0746 Tripterygium wilfordii HOM05D007399 ORTHO05D009341 8.6e-41 171.4 231 46.3
arahy.Tifrunner.gnm1.ann1.5JJB2W Arachis hypogaea HOM05D007399 ORTHO05D009341 1.5e-40 170.6 266 39.5
PGR083G1511 Punica granatum HOM05D007399 ORTHO05D009341 1.5e-40 170.6 227 44.5
Medtr8g013040 Medicago truncatula HOM05D007399 ORTHO05D009341 1.9e-40 170.2 229 45.9
COL.COLO4_15647 Corchorus olitorius HOM05D007399 ORTHO05D009341 2.5e-40 169.9 237 46.8
AT3G07150 Arabidopsis thaliana HOM05D007399 ORTHO05D009341 3.3e-40 169.5 224 48.2
arahy.Tifrunner.gnm1.ann1.YE6SLX Arachis hypogaea HOM05D007399 ORTHO05D009341 4.3e-40 169.1 226 43.4
FvH4_2g18740 Fragaria vesca HOM05D007399 ORTHO05D009341 4.3e-40 169.1 232 45.7
Cpa.g.sc8.134 Carica papaya HOM05D007399 ORTHO05D009341 7.3e-40 168.3 140 64.3
Sed0009642 Sechium edule HOM05D007399 ORTHO05D009341 7.3e-40 168.3 237 44.7
TPR.G17137 Trifolium pratense HOM05D007399 ORTHO05D009341 1.2e-39 167.5 227 44.9
Solyc09g059950.3 Solanum lycopersicum HOM05D007399 ORTHO05D009341 1.6e-39 167.2 222 47.7
Lalb_Chr12g0209951 Lupinus albus HOM05D007399 ORTHO05D009341 2.1e-39 166.8 185 49.7
FAN27G2185 Fragaria x ananassa HOM05D007399 ORTHO05D009341 2.8e-39 166.4 233 45.1
Glyma.16G101000 Glycine max HOM05D007399 ORTHO05D009341 6.2e-39 165.2 224 43.3
PSO170G3887 Papaver somniferum HOM05D007399 ORTHO05D009341 6.2e-39 165.2 241 41.9
BraA05t22833Z Brassica rapa HOM05D007399 ORTHO05D009341 1.1e-38 164.5 228 44.3
PSO357G0666 Papaver somniferum HOM05D007399 ORTHO05D009341 1.1e-38 164.5 238 40.8
PGSC0003DMG401023104 Solanum tuberosum HOM05D007399 ORTHO05D009341 1.4e-38 164.1 226 48.2
A05p41060 Brassica napus HOM05D007399 ORTHO05D009341 1.8e-38 163.7 228 44.3
Oeu037384.1 Olea europaea HOM05D007399 ORTHO05D009341 2.3e-38 163.3 98 78.6
AUR62001112 Chenopodium quinoa HOM05D007399 ORTHO05D009341 3.1e-38 162.9 218 45.9
BcaC05g29843 Brassica carinata HOM05D007399 ORTHO05D009341 4.0e-38 162.5 228 43.9
C05p60230 Brassica napus HOM05D007399 ORTHO05D009341 5.2e-38 162.2 228 43.9
BolC5t34673H Brassica oleracea HOM05D007399 ORTHO05D009341 8.9e-38 161.4 228 43.9
Aa31LG5G17710 Aethionema arabicum HOM05D007399 ORTHO05D009341 1.2e-37 161.0 227 43.6
Psat4g199960 Pisum sativum HOM05D007399 ORTHO05D009341 1.2e-37 161.0 224 42.9
Eucgr.H00781 Eucalyptus grandis HOM05D007399 ORTHO05D009341 4.4e-37 159.1 229 43.7
AL3G18400 Arabidopsis lyrata HOM05D007399 ORTHO05D009341 7.5e-37 158.3 223 45.3
DCAR_000523 Daucus carota HOM05D007399 ORTHO05D009341 7.5e-37 158.3 185 49.7
CSS0020487 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 2.2e-36 156.8 101 75.2
Atru.chr6.1505 Acer truncatum HOM05D007399 ORTHO05D009341 4.9e-36 155.6 102 73.5
MELO3C021053.2 Cucumis melo HOM05D007399 ORTHO05D009341 6.4e-36 155.2 232 40.5
CsaV3_7G026010 Cucumis sativus L. HOM05D007399 ORTHO05D009341 6.4e-36 155.2 232 40.1
Carub.0003s0667 Capsella rubella HOM05D007399 ORTHO05D009341 1.1e-35 154.5 224 45.5
FAN24G1833 Fragaria x ananassa HOM05D007399 ORTHO05D009341 1.4e-35 154.1 232 44.0
Thhalv10022223m.g Eutrema salsugineum HOM05D007399 ORTHO05D009341 1.2e-34 151.0 126 59.5
THA.LOC104802666 Tarenaya hassleriana HOM05D007399 ORTHO05D009341 1.2e-34 151.0 233 42.1
BcaC05g29751 Brassica carinata HOM05D007399 ORTHO05D009341 2.0e-34 150.2 229 41.5
Sp3g06090 Schrenkiella parvula HOM05D007399 ORTHO05D009341 1.3e-33 147.5 226 40.7
CARHR081750 Cardamine hirsuta HOM05D007399 ORTHO05D009341 1.1e-32 144.4 103 66.0
AUR62008936 Chenopodium quinoa HOM05D007399 ORTHO05D009341 4.3e-32 142.5 204 46.1
Sc24g0003500 Simmondsia chinensis HOM05D007399 ORTHO05D009341 4.7e-31 139.0 182 46.2
SalBow6G3187 Salvia bowleyana HOM05D007399 ORTHO05D009341 1.4e-30 137.5 223 39.5
SalBow6G3685 Salvia bowleyana HOM05D007399 ORTHO05D009341 1.4e-30 137.5 223 39.5
CDE06G2632 Ceratophyllum demersum HOM05D007399 ORTHO05D009341 2.6e-29 133.3 87 74.7
SHI28622 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-29 132.1 101 62.4
EL10Ac7g17870 Beta vulgaris HOM05D007399 ORTHO05D009341 7.5e-29 131.7 94 64.9
CANSAT01G2134 Cannabis sativa HOM05D007399 ORTHO05D009341 2.9e-28 129.8 158 43.7
CANSAT01G0413 Cannabis sativa HOM05D007399 ORTHO05D009341 8.3e-28 128.3 158 43.0
CANSAT01G1231 Cannabis sativa HOM05D007399 ORTHO05D009341 3.2e-27 126.3 147 46.9
CANSAT01G2481 Cannabis sativa HOM05D007399 ORTHO05D009341 5.6e-24 115.5 152 44.1
Hund20426 Selenicereus undatus HOM05D007399 ORTHO05D009341 1.8e-22 110.5 83 66.3
CSS0037252 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 6.4e-20 102.1 141 46.1
ATR0609G108 Amborella trichopoda HOM05D007399 ORTHO05D009341 4.3e-16 89.4 134 42.5
HPP92_011779 Vanilla planifolia HOM05D007399 ORTHO05D009341 5.6e-16 89.0 229 28.8
SEGI_10803 Sequoiadendron giganteum HOM05D007399 ORTHO05D009341 3.6e-15 86.3 149 32.9
Aqoxy5G00011 Aquilegia oxysepala HOM05D007399 ORTHO05D009341 1.8e-14 84.0 200 34.5
Os01g0918400 Oryza sativa ssp. japonica HOM05D007399 ORTHO05D009341 1.1e-11 74.7 64 53.1
Zm00001eb364650 Zea mays HOM05D007399 ORTHO05D009341 5.1e-09 65.9 64 45.3


User provided reference genes

Program Settings