Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.8e-293 1011.9 533 100.0
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.2e-262 907.1 595 83.0
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.4e-259 897.1 594 81.6
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.4e-259 897.1 594 81.6
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.8e-253 879.0 588 79.4
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.9e-251 870.9 597 79.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.6e-244 848.6 596 77.7
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.4e-242 842.8 598 76.1
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.6e-241 839.3 594 75.8
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.6e-241 839.3 597 75.0
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.6e-241 838.2 594 76.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.6e-241 837.8 595 76.6
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.9e-241 837.0 594 74.9
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.4e-240 836.3 594 75.4
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.0e-240 835.1 594 75.1
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.0e-239 832.4 595 74.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.5e-239 832.0 595 73.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.3e-238 829.7 594 74.6
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 9.1e-237 823.5 594 74.2
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.5e-236 821.2 594 73.9
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 8.5e-235 817.0 597 73.4
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.9e-234 815.8 596 74.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 5.5e-234 814.3 595 74.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 9.4e-234 813.5 594 73.2
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 9.4e-234 813.5 594 72.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.0e-231 805.8 596 72.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 5.7e-231 804.3 587 74.1
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 5.7e-231 804.3 597 73.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 6.3e-230 800.8 594 73.6
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.1e-229 800.0 599 72.6
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 7.0e-229 797.3 599 73.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 4.5e-228 794.7 594 71.7
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 8.5e-227 790.4 595 71.8
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-226 790.0 596 72.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.9e-226 789.3 598 72.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.2e-226 788.5 593 71.3
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 5.5e-226 787.7 596 72.5
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.6e-225 786.2 608 69.7
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.6e-225 786.2 594 73.1
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.0e-224 783.5 595 71.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.8e-224 782.7 595 70.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.2e-224 781.2 595 71.4
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.5e-223 779.6 599 71.6
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.4e-223 778.1 597 70.9
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 6.3e-222 774.2 595 69.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 7.0e-221 770.8 595 69.1
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 7.0e-221 770.8 599 69.3
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-220 770.0 606 65.8
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.6e-220 769.6 606 65.8
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.6e-220 769.6 596 71.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.0e-220 769.2 599 70.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 7.7e-220 767.3 606 68.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 2.9e-219 765.4 597 69.0
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.9e-218 762.7 599 70.8
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.5e-218 762.3 597 70.2
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.2e-218 761.9 600 69.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 3.6e-217 758.4 603 68.2
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.6e-217 758.4 601 68.2
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.7e-217 758.1 596 70.6
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 4.7e-217 758.1 596 68.3
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.0e-217 757.3 603 68.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 8.0e-217 757.3 597 69.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.0e-216 756.9 602 69.1
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-216 756.5 601 69.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.8e-216 756.1 603 67.8
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-216 756.1 601 69.9
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.7e-215 751.1 597 67.3
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.7e-214 749.6 598 69.9
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-214 749.2 603 69.3
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 8.2e-214 747.3 601 68.4
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.4e-213 745.7 602 68.9
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.1e-213 745.0 601 69.2
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 3.8e-211 738.4 609 67.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.2e-210 734.9 607 65.9
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.5e-207 726.5 612 66.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 6.3e-206 721.1 601 66.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.8e-205 719.5 600 65.5
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.8e-205 719.5 604 65.9
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 3.1e-205 718.8 595 65.5
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 3.1e-205 718.8 595 65.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.2e-204 716.8 604 65.6
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-204 716.5 600 65.3
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 7.7e-204 714.1 605 65.3
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.0e-203 713.8 598 65.7
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.3e-203 712.6 869 50.6
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-203 712.2 595 65.7
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-203 712.2 595 65.7
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.9e-203 712.2 595 65.7
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.9e-203 712.2 616 63.5
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.6e-203 710.7 603 65.3
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.5e-202 709.1 601 65.7
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.2e-202 708.4 602 65.8
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.0e-200 703.7 601 64.9
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 6.8e-200 701.0 595 67.6
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 3.4e-199 698.7 596 63.6
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 9.8e-199 697.2 596 63.8
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 4.9e-198 694.9 606 64.2
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.4e-197 693.3 610 62.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.1e-197 691.8 588 63.9
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 5.4e-197 691.4 594 64.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.0e-196 689.5 594 63.6
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 2.7e-196 689.1 597 63.7
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.7e-196 689.1 540 69.3
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 8.6e-195 684.1 605 62.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.3e-194 682.2 576 65.6
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 4.4e-191 671.8 594 63.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.4e-189 666.8 603 62.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 3.3e-186 655.6 607 61.3
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 9.5e-186 654.1 645 58.1
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.0e-184 648.7 595 60.2
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-182 643.7 548 65.0
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.6e-180 635.2 601 61.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 6.0e-180 634.8 545 61.3
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.2e-175 620.5 611 58.3
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.3e-174 617.1 611 57.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-168 597.4 556 59.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.1e-168 597.4 598 57.2
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.4e-167 592.0 619 55.7
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.9e-166 589.3 595 58.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-148 530.0 572 55.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-147 527.3 476 63.2
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.2e-140 504.2 517 59.8
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.1e-132 476.9 550 54.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.1e-130 471.1 493 57.4
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 2.6e-119 433.3 604 44.7
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.0e-115 421.4 596 43.5
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.1e-112 409.8 600 45.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.5e-101 373.6 243 77.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.0e-91 341.7 615 36.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.6e-84 317.8 588 38.1
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-67 261.9 167 77.8
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.1e-61 241.9 215 64.7
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.3e-54 217.6 607 30.8
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.3e-46 191.0 151 66.9
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.3e-41 175.3 322 39.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.2e-41 174.5 548 27.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.7e-30 136.0 267 40.8
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.0e-26 124.8 200 39.5
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.5e-26 123.6 213 51.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 7.1e-24 116.3 79 68.4
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 6.0e-23 113.2 79 67.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.3e-19 100.1 94 58.5
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-17 94.7 115 42.6
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.1e-13 82.4 626 19.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.1e-13 82.4 90 45.6
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.3e-12 76.6 59 64.4
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-10 72.4 87 47.1


User provided reference genes

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