Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 0.0e+00 1086.6 550 100.0
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.2e-277 958.0 551 89.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 3.2e-261 904.8 553 83.5
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 9.0e-248 860.1 552 79.5
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.9e-246 855.1 555 79.5
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 6.3e-241 837.4 558 78.9
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.2e-238 828.9 605 71.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 4.2e-237 824.7 517 82.2
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 4.2e-237 824.7 553 78.7
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.6e-236 822.8 550 77.6
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 5.1e-235 817.8 567 76.9
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.9e-234 815.8 560 77.5
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 2.5e-234 815.5 552 76.1
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 5.7e-234 814.3 554 77.3
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.6e-233 812.8 557 76.3
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 4.8e-233 811.2 553 77.6
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.1e-232 810.1 557 77.9
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.8e-232 809.3 557 77.7
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.9e-231 804.3 557 76.5
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.7e-230 802.7 550 74.5
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 6.5e-230 800.8 557 76.8
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 8.5e-230 800.4 555 76.0
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.9e-229 799.3 554 76.9
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 7.2e-229 797.3 554 75.3
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.2e-228 796.6 558 75.6
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 7.4e-226 787.3 553 75.6
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 8.2e-225 783.9 552 74.1
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 8.2e-225 783.9 552 74.5
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.4e-224 783.1 559 75.5
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.4e-224 783.1 553 74.0
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.8e-224 782.7 552 74.1
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 3.1e-224 781.9 553 75.4
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.3e-224 781.2 552 75.9
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.3e-224 781.2 553 73.8
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 9.1e-224 780.4 551 74.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.4e-223 778.5 560 73.0
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 7.7e-223 777.3 551 74.6
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.2e-220 770.0 560 73.0
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.4e-219 766.5 549 71.9
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.7e-219 764.2 548 71.5
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.8e-219 763.8 558 72.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 1.4e-216 756.5 558 71.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 3.1e-216 755.4 549 71.2
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.2e-215 753.4 614 70.0
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.2e-215 753.4 549 71.2
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 7.7e-215 750.7 635 66.6
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.0e-214 750.4 559 72.1
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-213 746.9 567 69.5
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.7e-212 742.3 549 70.1
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 6.1e-212 741.1 554 72.9
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 3.7e-209 731.9 555 71.5
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.1e-208 730.3 551 68.8
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.8e-208 729.6 555 71.4
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 5.0e-206 721.5 553 71.6
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 8.5e-206 720.7 556 67.8
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.5e-205 719.9 555 71.0
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.2e-205 718.4 544 73.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.2e-205 718.4 558 69.7
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.6e-204 716.5 555 69.7
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.6e-204 716.5 564 67.9
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 4.7e-204 714.9 555 72.8
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.0e-203 713.8 555 70.6
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 4.0e-203 711.8 552 69.9
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.0e-202 709.5 564 67.7
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 9.1e-200 700.7 553 69.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.0e-198 694.9 692 57.8
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.1e-197 693.7 577 65.2
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.9e-197 693.0 577 65.3
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.5e-197 692.6 537 68.7
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 5.5e-197 691.4 585 63.9
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 7.2e-197 691.0 559 69.4
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.2e-196 690.3 552 69.6
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.2e-196 690.3 466 76.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.8e-196 689.1 691 57.9
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.4e-195 686.8 541 70.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 3.0e-195 685.6 466 73.0
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 5.2e-195 684.9 550 69.5
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.0e-191 672.9 561 67.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.9e-190 669.1 570 66.8
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.9e-189 666.4 637 59.2
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 7.3e-189 664.5 564 65.6
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 7.3e-189 664.5 582 61.9
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.1e-188 661.4 518 69.1
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 8.3e-185 651.0 450 76.0
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.0e-183 646.4 567 64.0
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 6.8e-179 631.3 561 65.1
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.3e-177 627.1 564 64.0
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 9.2e-176 620.9 578 63.7
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 6.0e-175 618.2 567 62.3
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.5e-173 612.8 572 63.1
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 3.3e-173 612.5 576 62.8
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 5.6e-173 611.7 571 63.0
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.6e-172 610.1 571 62.2
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.8e-171 606.7 570 61.4
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.3e-169 600.5 573 61.4
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.2e-167 594.0 555 62.2
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.2e-167 594.0 557 60.0
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.6e-167 593.6 573 61.3
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.7e-166 590.1 530 62.3
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 1.5e-162 577.0 558 59.5
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.9e-160 570.1 574 59.8
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 3.2e-160 569.3 574 59.8
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 3.2e-160 569.3 574 59.8
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 7.8e-159 564.7 414 73.2
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.1e-155 554.3 574 57.5
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.1e-155 552.7 574 57.5
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 1.7e-150 537.0 577 54.4
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 3.6e-148 529.3 416 69.0
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 6.7e-142 508.4 585 51.8
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 2.1e-140 503.4 564 52.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 6.0e-135 485.3 555 52.3
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 6.0e-135 485.3 562 53.0
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.2e-130 471.1 551 49.9
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 2.0e-130 470.3 392 64.5
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.1e-107 394.8 566 44.9
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.2e-105 387.1 563 43.3
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.0e-102 378.3 415 54.0
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 5.7e-93 345.9 497 45.3
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.4e-91 341.3 311 62.7
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.1e-83 315.1 356 48.9
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 8.6e-65 252.3 468 39.7
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 8.1e-55 219.2 264 43.9
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 9.6e-40 169.1 165 60.6
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 8.1e-31 139.4 88 79.5
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.7e-26 124.4 86 73.3
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.3e-23 115.5 121 56.2
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 8.4e-20 102.8 84 63.1
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.1e-19 102.4 82 68.3
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.2e-19 100.9 174 33.3
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.1e-16 92.4 237 29.1
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.6e-15 88.6 243 29.6
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.4e-14 85.5 148 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.3e-14 83.6 221 28.1
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.7e-10 71.2 63 66.7
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 4.3e-08 63.9 59 57.6


User provided reference genes

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