Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.6e-203 712.6 389 100.0
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.8e-101 373.6 426 59.6
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 6.5e-91 338.6 393 56.2
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.9e-90 337.0 400 59.5
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 4.2e-90 335.9 393 55.7
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.0e-83 314.7 391 52.9
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 2.9e-83 313.2 409 52.1
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.2e-78 297.0 428 48.4
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 6.3e-78 295.4 443 46.3
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 5.9e-76 288.9 414 52.4
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.9e-74 283.9 456 43.9
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.2e-74 283.1 466 44.4
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 9.4e-74 281.6 416 51.7
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.6e-73 279.6 407 47.7
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 6.1e-73 278.9 388 50.5
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 3.9e-72 276.2 376 49.5
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 8.8e-72 275.0 440 48.4
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.1e-71 274.6 375 49.3
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-69 268.1 371 49.9
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 7.7e-68 261.9 393 47.3
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.2e-67 260.4 436 44.7
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 7.2e-66 255.4 430 42.3
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 2.7e-65 253.4 428 47.7
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.7e-65 253.4 385 50.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 6.1e-65 252.3 464 43.3
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 7.9e-65 251.9 474 42.6
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.0e-64 251.5 426 41.3
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.4e-64 251.1 421 48.7
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.0e-64 250.0 363 48.5
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.1e-63 248.1 440 42.3
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.8e-62 243.4 408 49.8
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.1e-61 241.5 401 45.9
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.3e-61 239.2 444 41.0
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.0e-61 238.8 444 42.1
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 7.0e-61 238.8 429 47.1
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.5e-60 236.5 440 42.0
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 1.0e-59 235.0 462 41.3
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 3.0e-56 223.4 446 39.7
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 5.2e-56 222.6 452 42.3
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.6e-55 220.3 413 42.9
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 5.7e-55 219.2 373 44.2
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 2.2e-54 217.2 369 45.3
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.2e-54 217.2 385 43.9
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.2e-54 217.2 410 44.4
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 3.7e-54 216.5 412 43.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.1e-53 214.9 370 44.9
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.4e-53 214.5 385 42.1
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.7e-51 207.6 438 39.5
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.9e-51 206.8 435 40.2
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.9e-51 206.8 435 40.2
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 5.0e-51 206.1 372 45.2
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 6.5e-51 205.7 426 41.5
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 6.5e-51 205.7 360 43.3
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.9e-50 204.1 426 40.8
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.2e-49 201.4 376 41.8
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.1e-49 200.7 578 37.0
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 6.1e-49 199.1 587 36.8
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 8.0e-49 198.7 439 43.1
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.4e-48 198.0 397 43.6
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.0e-48 196.8 422 40.8
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.0e-48 196.8 403 42.2
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.0e-48 196.8 403 42.2
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.2e-48 196.1 588 35.7
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.2e-48 196.1 377 41.9
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 6.8e-48 195.7 588 35.7
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.0e-47 194.1 391 42.5
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 2.6e-47 193.7 512 36.3
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 5.7e-47 192.6 415 41.2
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 5.7e-47 192.6 415 41.2
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 9.8e-47 191.8 354 41.8
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.8e-46 190.3 415 41.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 6.3e-46 189.1 506 34.0
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.1e-45 188.3 588 35.7
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.4e-45 187.2 390 42.8
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 1.2e-44 184.9 412 43.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.0e-44 184.1 330 39.4
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.2e-43 180.6 485 39.0
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.5e-43 179.1 392 40.6
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.1e-42 178.3 315 47.9
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.5e-42 177.2 400 41.0
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 5.5e-42 176.0 374 38.5
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.6e-41 174.5 399 41.6
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 3.6e-41 173.3 378 40.7
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 4.7e-41 172.9 279 45.9
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 4.7e-41 172.9 391 37.3
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.1e-41 172.6 377 41.1
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 8.0e-41 172.2 419 39.6
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 1.8e-40 171.0 428 39.3
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.3e-40 170.6 345 43.5
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.3e-40 170.6 375 41.3
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 8.8e-40 168.7 412 41.3
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.2e-39 168.3 385 39.0
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.0e-39 167.5 456 37.9
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.7e-39 166.0 295 46.1
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.2e-38 164.1 297 39.4
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 2.4e-37 160.6 420 40.0
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 7.0e-37 159.1 260 46.5
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 9.1e-37 158.7 412 38.6
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 9.1e-37 158.7 133 60.9
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.5e-36 156.8 379 36.9
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.9e-36 156.0 279 46.6
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.0e-35 155.2 279 40.9
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.5e-34 151.4 257 40.9
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 8.0e-33 145.6 352 36.4
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 8.0e-33 145.6 395 35.9
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.0e-32 145.2 357 41.5
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 5.7e-31 139.4 426 35.9
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 5.7e-31 139.4 357 35.9
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 2.2e-30 137.5 504 32.9
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.9e-30 136.3 345 38.8
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-27 126.7 255 37.3
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-27 126.7 211 40.8
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 6.6e-27 125.9 204 48.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 8.6e-27 125.6 120 70.0
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.5e-26 124.8 448 34.8
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 1.2e-25 121.7 403 32.5
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.2e-25 121.7 487 32.0
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 2.8e-25 120.6 208 41.3
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 8.0e-25 119.0 202 40.1
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 1.4e-24 118.2 314 37.9
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 3.1e-24 117.1 202 42.1
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 8.9e-24 115.5 202 41.1
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.7e-19 101.3 375 29.6
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 8.6e-19 99.0 358 32.1
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.4e-16 91.7 358 29.9
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.3e-16 90.9 182 37.9
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.2e-15 88.6 52 73.1
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.4e-13 81.6 205 37.6
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 5.4e-13 79.7 256 37.9
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 7.1e-13 79.3 360 28.6
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 2.1e-12 77.8 361 30.5
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 7.8e-12 75.9 152 43.4
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 6.6e-11 72.8 360 28.9
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 4.3e-10 70.1 151 45.7
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 3.6e-09 67.0 103 35.9
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.2e-08 63.2 190 33.7
SEGI_26671 Sequoiadendron giganteum HOM05D038370 ORTHO05D037583 1.7e-06 58.2 91 44.0
unitig_26.g9437 Utricularia gibba HOM05D005417 ORTHO05D002591 2.2e-06 57.8 275 30.2


User provided reference genes

Program Settings