Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.2e-245 852.8 452 100.0
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.8e-148 530.0 412 70.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.3e-148 529.6 392 73.5
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 5.1e-148 528.5 377 74.8
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.3e-147 525.4 373 76.1
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 4.3e-147 525.4 360 77.2
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.3e-146 523.9 391 72.4
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.6e-146 523.5 446 66.1
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.1e-146 523.1 357 76.2
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 8.2e-146 521.2 357 76.2
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 8.2e-146 521.2 373 74.5
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.4e-145 520.4 416 68.5
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.4e-145 519.6 418 69.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 6.5e-143 511.5 363 74.1
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 8.4e-143 511.1 385 71.4
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.5e-142 509.6 428 64.7
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 3.2e-142 509.2 367 72.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 3.2e-142 509.2 375 73.1
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 9.3e-142 507.7 399 66.9
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 9.3e-142 507.7 391 68.3
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.2e-141 507.3 300 83.7
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.6e-141 506.9 404 68.8
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.1e-141 506.5 423 66.2
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 2.7e-141 506.1 347 74.6
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 4.6e-141 505.4 307 82.1
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 6.0e-141 505.0 363 73.6
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 7.9e-141 504.6 326 78.8
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 7.9e-141 504.6 404 66.3
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 1.3e-140 503.8 342 76.0
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 3.9e-140 502.3 359 72.1
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 3.9e-140 502.3 403 68.2
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 3.9e-140 502.3 356 74.2
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 8.7e-140 501.1 375 70.9
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.9e-139 500.0 397 67.0
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.5e-139 499.6 431 63.3
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 4.8e-138 495.4 417 64.5
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.1e-137 494.2 405 68.9
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 4.1e-137 492.3 296 83.4
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 4.1e-137 492.3 358 72.1
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 9.0e-137 491.1 340 73.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 9.0e-137 491.1 344 73.3
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.2e-136 490.7 345 73.6
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.0e-136 490.0 358 71.2
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.0e-136 490.0 422 64.9
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.6e-136 489.6 349 74.5
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 2.6e-136 489.6 425 65.2
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 7.7e-136 488.0 352 74.1
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 5.0e-135 485.3 401 67.3
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 6.5e-135 485.0 366 72.4
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.4e-134 483.8 390 66.9
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.5e-134 483.0 396 64.9
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 7.2e-134 481.5 367 69.8
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 9.4e-134 481.1 297 80.5
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.6e-133 480.3 356 71.1
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.6e-133 480.3 360 69.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 4.6e-133 478.8 345 70.4
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 7.9e-133 478.0 360 68.9
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 1.8e-132 476.9 358 69.8
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.3e-132 476.5 308 77.6
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.9e-132 475.7 369 67.8
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.1e-131 474.2 371 67.1
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.1e-131 474.2 388 64.7
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.1e-131 474.2 360 69.7
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.9e-131 473.4 418 62.4
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 2.5e-131 473.0 347 70.0
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 4.3e-131 472.2 360 69.4
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.7e-130 470.3 299 77.6
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.2e-130 469.9 358 70.4
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 6.3e-130 468.4 397 63.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.4e-129 467.2 367 68.4
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 3.1e-129 466.1 348 70.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 5.3e-129 465.3 303 78.5
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 9.1e-129 464.5 280 84.3
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.2e-128 464.2 360 68.6
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.0e-128 463.4 313 76.0
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 3.4e-128 462.6 360 67.5
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 5.9e-128 461.8 279 82.4
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.0e-127 461.1 342 70.5
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.0e-127 461.1 422 60.0
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.9e-126 456.8 376 65.4
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.1e-123 447.6 377 62.9
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 2.2e-122 443.4 373 66.2
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 6.5e-119 431.8 371 63.1
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 9.4e-118 427.9 494 51.4
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 6.1e-117 425.2 318 71.1
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 8.2e-114 414.8 267 77.5
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.4e-113 414.1 382 61.5
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 4.5e-112 409.1 421 58.2
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.5e-110 404.1 365 57.8
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.0e-108 397.9 442 52.5
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 3.0e-108 396.4 292 72.3
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 1.5e-107 394.0 245 79.6
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.4e-107 392.5 363 62.3
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 2.2e-106 390.2 308 65.6
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 4.5e-104 382.5 361 57.6
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 5.4e-97 359.0 366 56.0
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 2.9e-95 353.2 393 52.2
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 6.8e-92 342.0 253 74.7
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 5.4e-89 332.4 246 72.8
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.5e-86 324.3 246 69.9
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 5.6e-86 322.4 243 70.4
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.0e-84 316.2 321 50.2
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 7.5e-83 312.0 275 64.7
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.0e-80 303.9 203 76.4
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 3.5e-80 303.1 374 49.2
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 6.6e-79 298.9 293 57.7
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.1e-77 293.9 275 59.6
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 3.5e-72 276.6 158 84.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.6e-69 267.7 158 80.4
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 6.6e-63 245.7 149 79.2
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 3.1e-60 236.9 194 67.5
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 7.6e-59 232.3 208 63.9
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 6.4e-42 176.0 148 64.9
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.8e-31 141.4 111 65.8
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 4.3e-30 136.7 123 58.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.3e-29 135.2 142 55.6
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 5.8e-27 126.3 107 61.7
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 3.5e-24 117.1 90 65.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 2.8e-21 107.5 92 63.0
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.5e-17 94.4 85 62.4
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 4.2e-17 93.6 256 29.7
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 8.8e-15 85.9 156 46.2
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-10 72.4 35 91.4
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 1.1e-09 68.9 264 26.1
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 3.6e-08 63.9 63 57.1
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 2.6e-06 57.8 51 64.7


User provided reference genes

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