Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 5.6e-72 274.6 190 100.0
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-56 223.8 179 87.7
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 8.1e-55 217.6 180 86.7
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.3e-52 210.3 178 83.1
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.8e-52 208.8 179 81.0
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.8e-52 208.8 173 87.3
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 6.4e-52 208.0 179 84.4
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 8.4e-52 207.6 179 81.0
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.1e-51 207.2 176 84.1
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.1e-51 207.2 174 85.1
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.4e-51 206.8 183 80.9
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.9e-51 206.5 177 78.5
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.9e-51 206.5 179 82.1
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 3.2e-51 205.7 177 80.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 3.2e-51 205.7 176 85.2
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 7.1e-51 204.5 179 82.7
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 7.1e-51 204.5 178 81.5
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.6e-50 203.4 177 79.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 2.1e-50 203.0 179 82.1
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 3.5e-50 202.2 176 80.7
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.5e-50 202.2 176 82.4
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.6e-50 201.8 174 82.2
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 6.0e-50 201.4 177 76.3
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 6.0e-50 201.4 176 81.8
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 6.0e-50 201.4 175 82.3
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 6.0e-50 201.4 175 82.3
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 7.9e-50 201.1 176 81.8
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 7.9e-50 201.1 176 81.8
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-49 200.7 177 78.5
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.0e-49 200.7 175 82.3
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.3e-49 200.3 178 80.9
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.3e-49 200.3 177 83.1
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.7e-49 199.9 175 78.3
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 2.3e-49 199.5 177 83.1
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 3.9e-49 198.7 174 74.1
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 6.6e-49 198.0 176 77.3
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 6.6e-49 198.0 177 79.7
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-48 197.2 178 58.4
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.1e-48 197.2 178 78.7
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.5e-48 196.8 174 82.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 1.5e-48 196.8 174 78.7
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 3.3e-48 195.7 176 77.3
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.3e-48 195.7 180 57.8
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 5.6e-48 194.9 175 78.9
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 7.3e-48 194.5 175 77.1
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 9.6e-48 194.1 174 81.0
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 9.6e-48 194.1 179 77.1
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.3e-47 193.7 174 81.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.6e-47 193.4 176 80.1
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.6e-47 193.4 177 78.5
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.1e-47 193.0 176 81.8
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.1e-47 193.0 175 76.6
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.1e-47 193.0 175 76.6
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.8e-47 192.6 174 79.9
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 2.8e-47 192.6 177 78.5
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 3.6e-47 192.2 176 81.2
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 3.6e-47 192.2 176 80.1
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 4.8e-47 191.8 176 80.1
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.8e-47 191.8 174 82.2
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 6.2e-47 191.4 180 76.1
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.1e-46 190.7 177 76.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 4.0e-46 188.7 176 77.3
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 4.0e-46 188.7 176 77.3
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 6.9e-46 188.0 179 79.9
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.2e-45 187.2 174 77.0
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 3.4e-45 185.7 179 75.4
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 9.9e-45 184.1 179 78.2
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.7e-44 183.3 175 74.9
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 2.2e-44 183.0 177 71.8
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 2.2e-44 183.0 174 78.2
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.9e-44 182.6 174 78.7
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 3.8e-44 182.2 179 76.5
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 4.9e-44 181.8 176 76.1
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.4e-44 181.4 201 50.2
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 4.2e-43 178.7 173 76.3
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 9.3e-43 177.6 175 75.4
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.2e-42 177.2 175 78.3
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.2e-42 177.2 176 54.0
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 6.0e-42 174.9 174 75.9
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.3e-41 173.7 176 52.8
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.3e-41 173.7 176 52.8
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 3.9e-41 172.2 176 74.4
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 3.9e-41 172.2 193 48.2
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 6.7e-41 171.4 174 54.0
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 6.7e-41 171.4 252 42.1
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.3e-39 167.2 159 82.4
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 6.2e-39 164.9 155 80.6
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 1.1e-38 164.1 175 49.7
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 3.4e-37 159.1 179 49.7
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.2e-36 156.4 204 58.8
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.5e-36 154.8 173 50.9
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.9e-35 153.3 174 44.3
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.1e-34 149.8 176 70.5
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 2.7e-34 149.4 192 67.7
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.5e-34 149.1 85 81.2
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 3.5e-34 149.1 178 44.9
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 6.0e-34 148.3 151 49.7
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 7.9e-34 147.9 174 47.1
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 5.1e-33 145.2 173 49.1
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 5.1e-33 145.2 176 48.9
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.5e-32 143.7 138 79.7
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.3e-32 142.1 138 82.6
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.6e-31 140.2 138 71.0
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 6.3e-31 138.3 85 77.6
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 3.1e-30 136.0 160 71.9
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.3e-30 135.2 128 77.3
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.3e-28 130.6 86 72.1
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 5.0e-28 128.6 86 70.9
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.0e-28 128.6 90 66.7
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.5e-28 128.3 86 70.9
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.9e-27 126.7 86 70.9
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 3.5e-26 122.5 86 69.8
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.5e-24 117.1 92 60.9
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 9.0e-22 107.8 216 35.6
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 1.0e-20 104.4 119 48.7
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.7e-20 103.6 120 49.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.1e-18 96.7 165 38.2
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.4e-17 94.0 128 43.0
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 6.3e-15 85.1 118 38.1
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 7.2e-11 71.6 102 43.1
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.6e-08 63.2 51 64.7
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 7.4e-08 61.6 37 78.4
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.7e-07 60.5 37 75.7
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.4e-06 56.6 37 67.6
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 9.1e-06 54.7 36 66.7


User provided reference genes

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