Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 0.0e+00 1312.7 670 100.0
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 0.0e+00 1089.3 648 84.9
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 0.0e+00 1080.5 671 80.6
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.2e-310 1069.3 671 80.2
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 8.5e-309 1063.1 664 80.3
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.7e-302 1041.6 671 77.3
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.9e-302 1040.4 671 77.8
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 4.1e-295 1017.7 673 75.8
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.2e-291 1006.1 655 77.7
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 1.0e-290 1003.0 649 77.7
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.8e-290 1002.3 670 74.8
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 5.2e-290 1000.7 645 77.4
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 7.5e-289 996.9 663 76.0
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 3.7e-288 994.6 670 74.3
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 4.9e-288 994.2 671 74.7
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.4e-288 993.8 670 73.9
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.4e-287 992.6 663 75.1
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 3.5e-286 988.0 671 73.8
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.7e-285 985.7 672 71.4
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 3.9e-285 984.6 671 72.4
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 5.0e-285 984.2 671 73.5
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.2e-283 979.5 643 75.7
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 2.1e-283 978.8 701 69.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 2.8e-283 978.4 676 73.7
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.4e-282 976.1 666 72.8
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.7e-280 969.1 672 71.6
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 7.0e-279 963.8 663 71.5
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 2.3e-277 958.7 671 71.1
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 6.6e-277 957.2 671 73.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 6.6e-277 957.2 669 71.0
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 1.9e-276 955.7 669 70.7
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.5e-276 955.3 675 71.1
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.8e-275 951.8 667 72.0
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 3.1e-274 948.3 661 71.0
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 6.4e-272 940.6 652 70.2
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 3.2e-271 938.3 666 69.5
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 2.7e-270 935.3 657 70.9
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 4.6e-270 934.5 671 70.6
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 6.0e-270 934.1 671 70.2
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.7e-269 932.6 671 69.3
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.9e-269 931.4 651 71.0
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 8.6e-269 930.2 691 68.0
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.3e-268 928.3 671 68.9
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 1.6e-267 926.0 656 68.8
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.1e-267 925.6 668 68.0
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.8e-267 925.2 671 69.6
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 4.7e-267 924.5 670 68.5
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 4.7e-267 924.5 667 69.1
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 6.2e-267 924.1 632 74.1
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.8e-266 922.5 730 65.6
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 5.2e-266 921.0 671 70.3
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 5.2e-266 921.0 671 69.2
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.2e-265 919.8 688 67.7
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 3.4e-265 918.3 671 66.9
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 4.4e-265 917.9 643 70.9
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 3.8e-264 914.8 671 66.9
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.6e-261 904.0 671 69.9
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 1.8e-258 896.0 580 76.2
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.7e-256 889.4 738 62.9
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.9e-255 885.9 668 66.3
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.6e-254 882.9 668 66.0
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 3.5e-254 881.7 663 65.3
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.7e-253 879.4 667 65.5
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 8.7e-253 877.1 674 65.1
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 1.9e-252 875.9 663 65.3
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.5e-252 875.5 663 65.3
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 4.8e-251 871.3 656 67.5
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.4e-250 869.8 661 65.1
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 3.1e-250 868.6 693 62.3
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-249 866.7 575 75.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.7e-248 862.8 649 67.5
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 8.4e-248 860.5 662 63.9
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.4e-247 859.8 661 64.4
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 3.0e-245 852.0 634 65.5
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.5e-244 849.7 657 63.5
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 3.7e-243 845.1 687 61.4
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 3.7e-243 845.1 683 63.4
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.8e-243 844.7 712 60.3
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.4e-242 843.2 707 63.1
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.2e-241 840.1 665 62.9
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 4.2e-239 831.6 572 72.6
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 2.7e-238 828.9 647 65.1
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 7.9e-238 827.4 731 58.1
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.9e-237 825.1 665 64.7
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 3.7e-235 818.5 556 73.9
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 6.9e-234 814.3 638 65.2
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.7e-229 797.7 671 63.8
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.5e-228 795.8 665 60.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.3e-227 793.5 644 62.0
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.2e-227 792.7 668 60.5
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 6.9e-226 787.7 644 60.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 6.9e-226 787.7 575 68.7
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 4.3e-220 768.5 699 57.2
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 7.7e-217 757.7 514 73.9
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 5.1e-213 745.0 668 57.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 8.2e-203 711.1 628 59.1
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 2.2e-195 686.4 671 55.4
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 6.1e-190 668.3 494 67.8
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.8e-189 666.8 594 57.1
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 7.5e-172 608.2 665 48.4
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.6e-166 590.5 649 48.2
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.4e-165 587.4 352 83.8
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.6e-140 503.4 681 42.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 2.7e-129 466.8 309 76.1
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 3.1e-125 453.4 579 46.1
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 6.5e-115 419.1 648 42.9
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 1.6e-97 361.3 306 57.8
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.1e-93 348.6 355 53.8
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 2.0e-79 301.2 640 32.5
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.8e-78 297.4 240 63.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 5.4e-69 266.5 333 46.2
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.0e-51 206.8 175 57.1
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 5.8e-47 193.4 324 36.1
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.1e-45 186.4 309 37.5
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 8.4e-38 162.9 630 27.3
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.3e-35 155.6 115 67.0
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 4.9e-30 137.1 113 65.5
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.1e-29 136.0 178 43.8
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.1e-28 131.7 122 57.4
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 8.1e-25 119.8 115 55.7
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 3.2e-21 107.8 83 67.5
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.0e-20 103.6 89 57.3
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.2e-15 89.4 60 61.7
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 2.0e-15 88.6 102 48.0
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.9e-14 84.7 62 58.1
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.9e-14 84.7 62 58.1
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.4e-13 82.4 65 56.9
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 2.4e-13 81.6 50 74.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.4e-13 81.6 47 78.7
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.2e-13 81.3 42 85.7
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.2e-13 81.3 47 78.7
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.1e-12 78.6 42 81.0
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.0e-12 77.0 47 76.6
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 7.4e-10 70.1 42 76.2
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.1e-09 68.6 35 85.7


User provided reference genes

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