Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1499.6 747 100.0
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1345.1 746 89.3
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1342.0 752 88.8
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1338.6 747 88.9
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1305.8 747 86.6
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1304.7 748 85.8
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1303.5 751 86.2
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1303.5 747 86.6
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1303.1 749 86.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1302.0 750 85.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1301.2 749 86.5
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1301.2 746 86.1
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1299.6 801 82.4
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1297.7 747 85.4
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1297.0 746 85.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1296.6 749 86.4
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1296.2 750 84.9
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1293.5 757 85.3
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1293.5 748 84.8
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 747 84.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1291.9 749 84.8
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1291.2 749 85.2
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1290.8 747 84.7
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1290.4 747 85.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1289.2 748 85.2
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1289.2 749 84.8
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1288.5 779 82.8
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1286.9 747 86.1
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1286.9 746 84.7
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1286.9 747 84.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1285.8 746 84.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1285.0 747 84.7
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 747 85.4
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 746 85.8
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 749 84.0
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 748 84.6
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1283.1 746 84.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1282.3 749 84.1
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 746 85.7
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1280.8 746 85.4
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1280.4 746 84.2
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1280.0 747 85.5
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 748 84.4
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 746 84.7
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 749 84.2
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1279.2 746 85.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1278.1 748 83.7
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 749 83.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 749 83.3
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 749 84.1
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 747 83.3
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 748 84.1
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 748 83.8
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 747 83.4
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1271.9 748 83.7
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1271.9 749 84.5
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1269.6 750 84.8
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 750 83.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1267.7 748 83.2
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1267.3 747 83.4
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 749 84.1
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 746 84.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 747 83.0
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1263.8 708 86.7
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 746 83.8
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 747 83.1
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 748 82.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 747 83.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 750 83.6
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 760 82.4
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 845 75.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 760 82.4
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 749 81.3
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1238.8 752 81.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 752 80.7
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1231.1 742 81.7
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1231.1 746 82.8
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 746 80.0
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 748 81.0
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 751 80.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 748 80.7
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 740 80.9
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 746 79.9
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 749 81.0
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 746 79.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 749 81.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 746 79.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 746 80.0
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 724 82.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 746 79.9
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1215.3 746 79.8
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 700 84.7
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 746 80.3
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 746 79.8
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 746 79.8
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 746 78.7
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1208.4 745 80.9
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1207.6 752 79.5
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 760 79.7
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 746 79.4
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 748 79.9
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1199.5 656 88.7
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 747 80.1
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 779 75.6
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 749 79.0
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 656 87.3
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 748 78.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 656 86.7
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1169.5 666 86.3
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1164.8 775 76.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1162.5 748 79.8
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1161.7 751 77.5
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 747 80.1
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1155.6 748 77.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1153.7 658 87.2
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1145.2 1057 59.7
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1134.8 760 74.9
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1106.3 625 88.6
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 7.6e-290 1000.3 678 69.9
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.6e-287 991.1 677 70.3
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-285 985.7 674 70.6
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.3e-283 977.6 676 70.1
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.3e-283 977.6 676 70.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-282 974.9 676 70.0
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 9.9e-282 973.4 676 69.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-260 903.3 596 76.7
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 5.0e-257 891.3 596 76.2
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 6.5e-249 864.4 678 61.8
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.3e-228 797.0 683 57.2
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 6.1e-223 778.1 699 56.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.1e-215 753.1 678 62.8
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.6e-213 746.1 675 56.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.1e-194 683.3 676 51.2
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.6e-175 620.5 709 47.8
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.1e-167 593.6 361 79.2
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.1e-163 581.3 323 90.4
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.5e-157 559.3 305 87.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.3e-144 516.5 301 86.7
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.4e-134 483.8 301 80.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 6.9e-134 482.3 305 78.0
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.8e-119 433.7 292 71.9
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 2.8e-111 407.1 236 83.1
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 3.7e-103 380.2 241 78.4
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.7e-103 380.2 219 85.8
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.0e-102 375.9 296 66.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.3e-99 367.1 296 65.2
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.1e-89 334.0 227 76.7
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 4.3e-75 287.0 172 79.7
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 4.7e-74 283.5 403 47.4
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.9e-67 261.5 368 39.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-66 258.1 126 97.6
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.2e-63 248.1 260 54.2
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.2e-62 243.8 175 71.4
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.5e-59 234.6 114 97.4
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.5e-51 208.8 143 78.3
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 5.1e-44 183.7 162 60.5
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-40 172.2 175 56.0
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 2.0e-40 171.8 122 70.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.4e-38 165.6 102 69.6
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 1.8e-33 148.7 96 75.0
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.5e-32 144.1 117 69.2
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 7.6e-32 143.3 141 51.1
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 9.3e-30 136.3 142 60.6
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.6e-29 135.6 83 78.3
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 4.6e-29 134.0 105 62.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.1e-27 129.4 141 53.9
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.2e-26 123.2 61 90.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.5e-24 119.0 99 64.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 5.0e-23 114.0 220 30.9
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.7e-15 89.0 56 75.0
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 88.6 50 78.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 5.7e-11 73.9 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5


User provided reference genes

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