Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 2015.4 1040 100.0
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1511.9 1041 76.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1498.8 1041 74.6
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1463.4 1042 73.3
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1438.7 1018 73.7
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1431.4 1042 72.6
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1416.0 1041 72.5
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1405.6 1030 72.8
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1401.7 1014 71.6
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1393.3 960 75.6
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1382.5 1146 66.3
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1378.6 1033 69.5
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1363.6 1022 70.0
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1355.9 1046 68.5
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1354.3 1044 68.3
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1337.4 1038 69.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1334.3 1037 69.6
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1331.6 1040 68.4
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1330.5 1061 68.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1329.7 987 70.4
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1324.7 1044 67.2
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1322.4 1049 67.3
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1318.5 1036 67.6
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1310.8 1044 67.5
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1302.7 1014 66.8
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1302.7 1014 66.8
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1302.0 1054 65.5
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1300.8 1043 65.8
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1294.3 1042 66.5
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1285.8 996 68.8
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1284.2 1044 65.4
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1282.7 1008 66.4
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1280.8 1040 66.2
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1279.6 1040 66.1
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1272.3 1044 64.3
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1272.3 1046 65.6
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1263.8 1044 65.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1262.7 1019 64.9
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1262.3 1021 65.0
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1254.6 1025 64.2
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1254.2 1038 64.2
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1251.9 1023 65.9
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1247.6 1047 64.1
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1245.0 1019 64.0
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1244.2 1045 63.2
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1241.1 1039 63.4
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1239.6 1038 64.2
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1239.2 1039 63.3
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1233.0 1046 63.3
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1232.6 938 68.7
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1230.7 1040 63.2
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1061 64.4
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1225.7 982 64.7
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1221.1 1036 62.8
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1220.3 1032 62.9
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1219.9 1028 63.0
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1219.5 1047 63.6
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1205.3 1025 62.2
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1201.0 1038 62.8
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1196.8 1043 62.3
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1196.4 1077 60.0
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1195.3 1038 61.8
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1192.2 1043 61.4
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1191.4 1040 62.3
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1191.0 1056 62.5
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1188.3 1039 61.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1186.4 1037 62.6
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1170.6 1053 60.2
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1170.2 1025 61.6
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1164.8 1055 60.8
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1142.5 1047 59.0
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1139.4 1054 59.3
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1138.3 1049 58.8
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1137.5 1054 59.2
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 0.0e+00 1135.9 1032 58.5
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1126.7 1060 58.5
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 0.0e+00 1124.0 1026 59.4
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1113.6 1040 58.6
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1113.6 1040 58.6
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 0.0e+00 1100.9 1159 54.4
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1100.1 1051 57.5
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 0.0e+00 1099.0 1051 57.5
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1095.9 1043 57.9
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1094.3 1076 56.3
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 2.4e-310 1068.9 1049 55.9
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 4.6e-309 1064.7 937 61.4
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 2.1e-293 1012.7 1052 56.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.9e-292 1008.4 846 62.3
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.1e-290 1002.7 748 68.3
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.4e-289 1000.0 764 67.3
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.4e-286 989.2 738 68.3
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 9.6e-283 977.2 754 66.0
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 7.1e-278 961.1 646 75.5
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.1e-277 959.5 754 65.4
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 8.7e-276 954.1 778 64.0
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 9.3e-270 934.1 555 85.6
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.8e-268 929.9 1038 53.8
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 4.1e-233 812.4 676 63.9
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 3.2e-230 802.7 1001 47.1
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 4.4e-211 739.2 580 64.0
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.8e-197 693.3 605 59.7
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.4e-196 691.0 1048 41.3
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.4e-187 659.8 722 51.8
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.2e-181 641.3 910 42.6
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 5.8e-179 632.5 436 73.2
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 4.6e-168 596.3 931 39.2
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.6e-158 562.8 671 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 2.8e-157 560.5 1008 37.9
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 5.7e-110 403.3 804 37.7
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.7e-98 365.2 315 59.0
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.9e-98 364.4 248 74.6
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.1e-89 335.9 365 51.8
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 8.9e-87 326.2 245 69.8
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.2e-85 321.6 409 45.7
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 3.3e-81 307.8 272 58.5
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-77 294.7 421 40.1
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 8.3e-77 293.1 759 28.6
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.7e-69 268.9 234 63.2
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.7e-69 267.7 204 65.2
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 7.1e-68 263.5 310 51.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.5e-65 255.8 200 63.0
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 9.9e-62 243.0 250 56.4
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.2e-59 236.1 854 27.4
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 8.7e-42 176.8 133 71.4
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.6e-40 172.6 278 44.6
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.5e-33 149.4 108 71.3
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 5.8e-22 110.9 86 66.3
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.0e-21 110.2 64 79.7
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 6.1e-19 100.9 68 72.1
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.7e-18 97.4 68 70.6
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 6.3e-16 90.9 77 59.7
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.3e-16 90.9 70 62.9
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 5.0e-13 81.3 351 27.1
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.2e-12 78.6 112 41.1
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 4.2e-12 78.2 52 73.1
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 2.3e-10 72.4 298 23.5
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 2.5e-09 68.9 46 71.7


User provided reference genes

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