Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 3.7e-213 744.6 370 100.0
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.4e-127 460.3 302 74.5
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 4.7e-123 445.3 316 70.6
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.6e-118 429.5 305 69.2
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 4.5e-110 402.1 313 65.2
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 4.5e-102 375.6 302 66.6
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 5.9e-102 375.2 313 65.2
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 5.5e-100 368.6 305 63.3
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 3.6e-99 365.9 305 62.6
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 6.8e-98 361.7 316 61.7
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 6.8e-98 361.7 320 58.8
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 8.8e-98 361.3 300 63.0
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 1.2e-97 360.9 305 62.0
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 3.4e-97 359.4 305 60.7
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 1.3e-96 357.5 301 62.8
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 6.3e-96 355.1 308 62.3
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.1e-95 354.4 325 58.5
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.2e-94 350.9 261 70.5
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 4.5e-94 349.0 302 64.6
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 5.0e-93 345.5 318 60.7
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 2.5e-92 343.2 313 57.2
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 3.6e-91 339.3 301 58.8
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.4e-90 337.4 305 61.3
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.8e-90 337.0 302 59.9
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.3e-90 336.7 319 53.9
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 3.0e-90 336.3 291 60.5
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 5.2e-90 335.5 310 60.0
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 5.2e-90 335.5 271 63.5
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.7e-89 332.0 319 53.3
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 7.5e-89 331.6 303 57.4
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.7e-88 330.5 314 59.2
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 2.2e-88 330.1 307 55.0
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.9e-88 329.7 315 55.9
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 6.4e-88 328.6 279 63.4
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 8.3e-88 328.2 301 57.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.2e-87 326.2 301 59.5
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.2e-87 326.2 314 58.6
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.5e-86 322.8 279 62.4
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 7.8e-86 321.6 285 61.1
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 1.0e-85 321.2 314 57.3
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.0e-85 321.2 279 62.0
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.7e-85 320.5 312 53.5
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 8.6e-85 318.2 306 57.5
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 2.5e-84 316.6 314 55.4
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.5e-84 316.6 312 55.8
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 3.3e-84 316.2 291 58.1
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 7.3e-84 315.1 314 55.1
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 7.3e-84 315.1 301 56.5
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 7.3e-84 315.1 301 56.5
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.8e-83 313.2 305 54.4
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.6e-83 312.8 330 53.3
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 6.2e-83 312.0 312 57.4
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 1.4e-82 310.8 317 55.2
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 5.2e-82 308.9 315 54.9
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 5.2e-82 308.9 315 54.9
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 8.9e-82 308.1 312 53.8
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 8.9e-82 308.1 315 52.4
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.5e-81 307.4 302 55.3
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.5e-81 307.4 302 55.3
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.6e-81 306.6 302 54.3
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 3.4e-81 306.2 315 54.6
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.4e-81 306.2 312 55.4
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 4.4e-81 305.8 293 57.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 5.8e-81 305.4 291 57.0
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 7.5e-81 305.1 306 54.6
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 7.5e-81 305.1 312 52.9
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 9.8e-81 304.7 310 54.2
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 1.3e-80 304.3 292 57.5
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 2.2e-80 303.5 319 53.3
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 8.3e-80 301.6 315 53.7
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 8.3e-80 301.6 311 52.7
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 8.3e-80 301.6 314 53.8
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 8.3e-80 301.6 230 66.5
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 5.4e-79 298.9 273 56.8
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 7.0e-79 298.5 309 53.7
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 7.0e-79 298.5 305 53.4
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.6e-78 297.4 305 54.8
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 4.6e-78 295.8 306 52.9
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.3e-77 294.3 269 61.0
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 2.3e-77 293.5 305 52.5
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 1.4e-74 284.3 292 53.4
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 3.1e-74 283.1 317 50.5
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.6e-73 280.0 298 53.4
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 4.4e-73 279.3 284 54.2
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 2.2e-72 276.9 299 50.5
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.2e-72 276.9 291 53.6
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 2.2e-72 276.9 316 52.5
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 2.9e-72 276.6 283 54.4
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.1e-71 274.6 250 56.8
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.9e-71 273.9 240 61.2
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 2.7e-70 270.0 312 50.0
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.8e-70 268.5 314 52.9
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.3e-69 266.9 301 53.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.6e-69 265.0 301 53.2
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 8.6e-69 265.0 247 56.3
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.9e-68 263.8 345 46.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.9e-65 251.5 312 47.4
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 9.9e-65 251.5 313 47.6
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.2e-64 250.4 287 50.2
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 8.4e-64 248.4 308 46.4
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.1e-62 243.8 299 47.5
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 7.8e-62 241.9 309 45.0
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 1.9e-60 237.3 322 43.2
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 3.3e-60 236.5 271 49.8
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 6.8e-58 228.8 298 45.0
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 2.2e-56 223.8 168 66.1
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 1.4e-55 221.1 376 40.2
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.0e-53 214.9 233 48.9
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 5.6e-52 209.1 236 52.5
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.6e-52 208.4 240 49.6
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.9e-48 196.8 221 51.1
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 9.3e-47 191.8 263 45.6
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 9.3e-47 191.8 263 45.6
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.0e-45 186.8 218 49.1
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.6e-43 181.0 323 39.0
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.2e-40 170.6 375 31.7
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 2.9e-40 170.2 207 49.8
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 8.4e-40 168.7 363 33.3
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.2e-38 164.9 285 37.5
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 9.6e-36 155.2 99 71.7
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 8.1e-35 152.1 205 46.8
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.8e-34 151.0 154 55.2
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 6.9e-34 149.1 166 56.0
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 3.4e-33 146.7 220 42.3
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.2e-32 144.1 146 55.5
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 4.9e-32 142.9 227 39.6
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 5.5e-31 139.4 323 32.5
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 1.8e-29 134.4 147 49.7
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 6.7e-29 132.5 113 56.6
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.3e-27 128.3 307 35.5
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 5.3e-26 122.9 158 42.4
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 3.9e-21 106.7 77 64.9
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.5e-20 104.8 162 39.5
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 4.3e-20 103.2 144 43.8
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 3.7e-19 100.1 130 45.4
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 9.0e-18 95.5 66 71.2
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 5.0e-16 89.7 99 49.5
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.8e-13 81.3 77 57.1
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 3.0e-13 80.5 100 45.0
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 1.8e-10 71.2 87 50.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.3e-08 65.1 166 27.7
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 2.9e-08 63.9 34 82.4
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 6.5e-08 62.8 58 51.7
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.2e-07 60.1 147 29.3
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 9.4e-07 58.9 81 37.0
Dinv00149 Davidia involucrata HOM05D004964 ORTHO05D005918 6.1e-06 56.2 29 89.7


User provided reference genes

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