Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18960 Davidia involucrata HOM05D000364 ORTHO05D035068 9.6e-68 260.0 128 100.0
Dinv17862 Davidia involucrata HOM05D000364 ORTHO05D000235 1.1e-34 150.2 149 59.7
TAR271G0008 Trochodendron aralioides HOM05D000364 ORTHO05D000235 6.7e-29 131.0 143 51.7
Nn1g03779 Nelumbo nucifera HOM05D000364 ORTHO05D000235 1.1e-28 130.2 143 47.6
CAN.G424.83 Capsicum annuum HOM05D000364 ORTHO05D000235 6.3e-27 124.4 139 51.1
GSVIVG01005301001 Vitis vinifera HOM05D000364 ORTHO05D000235 6.3e-27 124.4 144 50.0
Hma1.2p1_0809F.1_g221840 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 8.2e-27 124.0 113 55.8
QL05p077869 Quercus lobata HOM05D000364 ORTHO05D000235 1.8e-26 122.9 149 49.7
Cc02_g11950 Coffea canephora HOM05D000364 ORTHO05D000235 3.1e-26 122.1 148 45.9
Nitab4.5_0001223g0190 Nicotiana tabacum HOM05D000364 ORTHO05D000235 5.3e-26 121.3 134 51.5
Nitab4.5_0007666g0030 Nicotiana tabacum HOM05D000364 ORTHO05D000235 7.0e-26 120.9 139 51.1
Solyc02g079760.3 Solanum lycopersicum HOM05D000364 ORTHO05D000235 3.5e-25 118.6 139 48.2
Sopen02g024530 Solanum pennellii HOM05D000364 ORTHO05D000235 7.7e-25 117.5 139 47.5
PGSC0003DMG400013875 Solanum tuberosum HOM05D000364 ORTHO05D000235 1.3e-24 116.7 140 47.9
Cfa000296 Carpinus fangiana HOM05D000364 ORTHO05D000235 1.5e-23 113.2 155 47.1
MBI02_g37286_MAGBIO Magnolia biondii HOM05D000364 ORTHO05D000235 1.5e-23 113.2 159 44.7
TAR627G0795 Trochodendron aralioides HOM05D000364 ORTHO05D000235 1.9e-23 112.8 143 46.2
MSTRG.14655 Avicennia marina HOM05D000364 ORTHO05D000235 1.6e-22 109.8 147 44.2
Duzib160G0707 Durio zibethinus HOM05D000364 ORTHO05D000235 2.7e-22 109.0 149 43.6
Thecc.06G205700 Theobroma cacao HOM05D000364 ORTHO05D000235 3.6e-22 108.6 149 46.3
TAR624G0785 Trochodendron aralioides HOM05D000364 ORTHO05D000235 6.1e-22 107.8 144 46.5
Duzib235G0893 Durio zibethinus HOM05D000364 ORTHO05D000235 8.0e-22 107.5 149 43.6
Oeu051240.1 Olea europaea HOM05D000364 ORTHO05D000235 3.0e-21 105.5 144 44.4
CDE05G0196 Ceratophyllum demersum HOM05D000364 ORTHO05D000235 4.0e-21 105.1 139 44.6
Gohir.D05G170100 Gossypium hirsutum HOM05D000364 ORTHO05D000235 4.0e-21 105.1 140 43.6
Gorai.009G175300 Gossypium raimondii HOM05D000364 ORTHO05D000235 5.2e-21 104.8 140 43.6
Peaxi162Scf01306g00019 Petunia axillaris HOM05D000364 ORTHO05D000235 6.7e-21 104.4 143 45.5
Haze_06637 Corylus avellana HOM05D000364 ORTHO05D000235 8.8e-21 104.0 155 45.8
Haze_06648 Corylus avellana HOM05D000364 ORTHO05D000235 8.8e-21 104.0 155 45.8
Gohir.A05G167100 Gossypium hirsutum HOM05D000364 ORTHO05D000235 1.1e-20 103.6 140 43.6
DCAR_008102 Daucus carota HOM05D000364 ORTHO05D000235 7.4e-20 100.9 145 43.4
Oeu016141.1 Olea europaea HOM05D000364 ORTHO05D000235 4.8e-19 98.2 131 48.9
Gohir.A06G122002 Gossypium hirsutum HOM05D000364 ORTHO05D000235 1.4e-18 96.7 150 38.0
Oeu037331.1 Olea europaea HOM05D000364 ORTHO05D000235 3.1e-18 95.5 145 42.1
DCAR_004166 Daucus carota HOM05D000364 ORTHO05D000235 7.0e-18 94.4 137 42.3
TAR626G1768 Trochodendron aralioides HOM05D000364 ORTHO05D000235 7.0e-18 94.4 135 45.2
CSS0049912 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 2.6e-17 92.4 148 42.6
Dinv35591 Davidia involucrata HOM05D000364 ORTHO05D181528 3.5e-17 92.0 87 59.8
CiPaw.11G179900 Carya illinoinensis HOM05D000364 ORTHO05D000235 4.5e-17 91.7 140 44.3
Gorai.010G147100 Gossypium raimondii HOM05D000364 ORTHO05D000235 4.5e-17 91.7 151 36.4
CiPaw.09G154100 Carya illinoinensis HOM05D000364 ORTHO05D000235 7.7e-17 90.9 155 41.9
Gohir.D06G126200 Gossypium hirsutum HOM05D000364 ORTHO05D000235 1.0e-16 90.5 150 36.7
Oeu040966.1 Olea europaea HOM05D000364 ORTHO05D000235 1.3e-16 90.1 131 45.0
Oeu050811.1 Olea europaea HOM05D000364 ORTHO05D000235 1.7e-16 89.7 122 44.3
QL08p014728 Quercus lobata HOM05D000364 ORTHO05D000235 2.9e-16 89.0 141 43.3
Lj1A859T22 Lonicera japonica HOM05D000364 ORTHO05D000235 1.1e-15 87.0 144 44.4
MD10G1309200 Malus domestica HOM05D000364 ORTHO05D000235 1.1e-15 87.0 146 41.1
Manes.15G080500 Manihot esculenta HOM05D000364 ORTHO05D000235 1.1e-15 87.0 136 42.6
COL.COLO4_31665 Corchorus olitorius HOM05D000364 ORTHO05D000235 1.5e-15 86.7 169 37.9
MSTRG.7258 Avicennia marina HOM05D000364 ORTHO05D000235 2.5e-15 85.9 147 38.1
Aqoxy1G03962 Aquilegia oxysepala HOM05D000364 ORTHO05D000235 4.2e-15 85.1 132 41.7
Dinv22335 Davidia involucrata HOM05D000364 ORTHO05D000235 4.2e-15 85.1 151 42.4
MSTRG.13166 Avicennia marina HOM05D000364 ORTHO05D000235 9.4e-15 84.0 148 41.2
MBI18_g09197_MAGBIO Magnolia biondii HOM05D061978 ORTHO05D035068 9.4e-15 84.0 115 47.8
CiPaw.12G124400 Carya illinoinensis HOM05D000364 ORTHO05D000235 1.2e-14 83.6 150 40.0
Peaxi162Scf00859g00037 Petunia axillaris HOM05D000364 ORTHO05D000235 2.1e-14 82.8 144 41.0
Duzib192G0431 Durio zibethinus HOM05D000364 ORTHO05D000235 2.7e-14 82.4 152 36.8
Sabra11G0116900 Salix brachista HOM05D000364 ORTHO05D000235 2.7e-14 82.4 140 41.4
FvH4_3g21440 Fragaria vesca HOM05D000364 ORTHO05D000235 6.1e-14 81.3 136 40.4
FAN11G2218 Fragaria x ananassa HOM05D000364 ORTHO05D000235 6.1e-14 81.3 136 40.4
FAN16G3716 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.4e-13 80.1 136 39.7
FAN25G0592 Fragaria x ananassa HOM05D000364 ORTHO05D000235 1.4e-13 80.1 136 39.7
Oeu053395.1 Olea europaea HOM05D000364 ORTHO05D000235 1.8e-13 79.7 137 35.8
Potri.011G129500 Populus trichocarpa HOM05D000364 ORTHO05D000235 1.8e-13 79.7 140 40.7
Prupe.4G196600 Prunus persica HOM05D000364 ORTHO05D000235 1.8e-13 79.7 138 41.3
RcHm_v2.0_Chr5g0036871 Rosa chinensis HOM05D000364 ORTHO05D000235 1.8e-13 79.7 138 39.1
Cfa020475 Carpinus fangiana HOM05D000364 ORTHO05D000235 2.3e-13 79.3 141 41.8
CSS0030308 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 4.0e-13 78.6 153 42.5
Manes.17G031100 Manihot esculenta HOM05D000364 ORTHO05D000235 5.2e-13 78.2 172 36.6
FAN21G1614 Fragaria x ananassa HOM05D000364 ORTHO05D000235 6.8e-13 77.8 136 39.0
MD03G1216400 Malus domestica HOM05D000364 ORTHO05D000235 8.8e-13 77.4 138 42.8
Manes.16G015400 Manihot esculenta HOM05D000364 ORTHO05D000235 8.8e-13 77.4 167 39.5
MD11G1230700 Malus domestica HOM05D000364 ORTHO05D000235 1.2e-12 77.0 139 41.7
MSTRG.6871 Avicennia marina HOM05D000364 ORTHO05D000235 1.5e-12 76.6 131 40.5
Cpa.g.sc12.1 Carica papaya HOM05D000364 ORTHO05D000235 1.5e-12 76.6 131 45.8
vmacro03746 Vaccinium macrocarpon HOM05D000364 ORTHO05D000235 2.0e-12 76.3 137 38.7
Cpa.g.sc27.162 Carica papaya HOM05D000364 ORTHO05D000235 2.6e-12 75.9 162 37.7
CiPaw.10G113800 Carya illinoinensis HOM05D000364 ORTHO05D000235 2.6e-12 75.9 151 39.7
Potri.001G410600 Populus trichocarpa HOM05D000364 ORTHO05D000235 2.6e-12 75.9 140 40.7
Haze_09567 Corylus avellana HOM05D000364 ORTHO05D000235 3.4e-12 75.5 139 41.0
Duzib268G0761 Durio zibethinus HOM05D000364 ORTHO05D000235 3.4e-12 75.5 143 38.5
Lj2A276T59 Lonicera japonica HOM05D000364 ORTHO05D000235 5.7e-12 74.7 114 39.5
MD05G1334300 Malus domestica HOM05D000364 ORTHO05D000235 1.3e-11 73.6 115 41.7
Prupe.4G030900 Prunus persica HOM05D000364 ORTHO05D000235 3.7e-11 72.0 106 43.4
Thecc.07G058500 Theobroma cacao HOM05D000364 ORTHO05D000235 3.7e-11 72.0 145 40.0
Migut.M01838 Erythranthe guttata HOM05D000364 ORTHO05D000235 4.8e-11 71.6 128 40.6
Manes.03G119700 Manihot esculenta HOM05D000364 ORTHO05D000235 4.8e-11 71.6 119 42.0
VMungo1080G1268 Vigna mungo HOM05D000364 ORTHO05D000235 4.8e-11 71.6 137 39.4
Glyma.13G284400 Glycine max HOM05D000364 ORTHO05D000235 6.3e-11 71.2 136 41.9
ATR0804G045 Amborella trichopoda HOM05D000364 ORTHO05D000235 8.3e-11 70.9 131 37.4
COL.COLO4_09526 Corchorus olitorius HOM05D000364 ORTHO05D000235 1.1e-10 70.5 147 36.1
Dinv22336 Davidia involucrata HOM05D000364 ORTHO05D029216 1.1e-10 70.5 122 41.8
Rhsim13G0163900 Rhododendron simsii HOM05D000364 ORTHO05D000235 1.4e-10 70.1 135 38.5
Sabra16G0276000 Salix brachista HOM05D000364 ORTHO05D000235 1.4e-10 70.1 135 37.8
Sabra16G0280400 Salix brachista HOM05D000364 ORTHO05D000235 1.4e-10 70.1 135 37.8
Duzib213G0464 Durio zibethinus HOM05D000364 ORTHO05D000235 1.8e-10 69.7 149 38.9
Nitab4.5_0005140g0050 Nicotiana tabacum HOM05D000364 ORTHO05D000235 1.8e-10 69.7 123 40.7
Phvul.005G089000 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 1.8e-10 69.7 137 38.7
Potri.011G033000 Populus trichocarpa HOM05D000364 ORTHO05D000235 2.4e-10 69.3 144 37.5
Sc05g0008240 Simmondsia chinensis HOM05D000364 ORTHO05D000235 2.4e-10 69.3 156 32.1
MSTRG.12941 Avicennia marina HOM05D000364 ORTHO05D000235 3.1e-10 68.9 141 34.8
Lalb_Chr20g0122561 Lupinus albus HOM05D000364 ORTHO05D000235 3.1e-10 68.9 161 35.4
Potri.004G029100 Populus trichocarpa HOM05D000364 ORTHO05D000235 4.1e-10 68.6 145 37.2
PSO832G3433 Papaver somniferum HOM05D000364 ORTHO05D000235 5.4e-10 68.2 153 35.3
CSS0047155 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 7.0e-10 67.8 69 59.4
Nitab4.5_0014279g0010 Nicotiana tabacum HOM05D000364 ORTHO05D000235 7.0e-10 67.8 113 44.2
TPR.G19623 Trifolium pratense HOM05D000364 ORTHO05D000235 7.0e-10 67.8 141 34.8
Hma1.2p1_0905F.1_g235385 Hydrangea macrophylla HOM05D000364 ORTHO05D000235 9.1e-10 67.4 133 36.1
Lalb_Chr18g0060081 Lupinus albus HOM05D000364 ORTHO05D000235 9.1e-10 67.4 152 34.9
SHI31887 Sapria himalayana HOM05D000364 ORTHO05D000235 9.1e-10 67.4 123 40.7
Lsat_1_v5_gn_7_18640 Lactuca sativa HOM05D000364 ORTHO05D000235 1.2e-09 67.0 114 43.0
Lj6g0016286 Lotus japonicus HOM05D000364 ORTHO05D000235 1.2e-09 67.0 164 32.3
AUR62012538 Chenopodium quinoa HOM05D000364 ORTHO05D000235 3.5e-09 65.5 138 33.3
PSO210G5974 Papaver somniferum HOM05D000364 ORTHO05D000235 3.5e-09 65.5 153 34.6
MSTRG.15951 Avicennia marina HOM05D000364 ORTHO05D000235 4.5e-09 65.1 137 36.5
Ciclev10008228m.g Citrus clementina HOM05D000364 ORTHO05D000235 4.5e-09 65.1 147 37.4
SGA_v2.0_scaffold49G18272 Striga asiatica HOM05D000364 ORTHO05D000235 4.5e-09 65.1 105 39.0
AUR62014656 Chenopodium quinoa HOM05D000364 ORTHO05D000235 7.7e-09 64.3 126 34.1
Phvul.006G195000 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 7.7e-09 64.3 155 31.6
RcHm_v2.0_Chr5g0004831 Rosa chinensis HOM05D000364 ORTHO05D000235 1.0e-08 63.9 114 42.1
SalBow7G0334 Salvia bowleyana HOM05D000364 ORTHO05D000235 1.0e-08 63.9 140 36.4
Hund23561 Selenicereus undatus HOM05D000364 ORTHO05D000235 1.0e-08 63.9 121 37.2
Gohir.A01G071500 Gossypium hirsutum HOM05D000364 ORTHO05D000235 1.3e-08 63.5 155 38.1
Lalb_Chr14g0365981 Lupinus albus HOM05D000364 ORTHO05D000235 1.3e-08 63.5 123 37.4
Sabra04G0016400 Salix brachista HOM05D000364 ORTHO05D000235 1.7e-08 63.2 145 35.9
Lsat_1_v5_gn_4_58400 Lactuca sativa HOM05D000364 ORTHO05D000235 2.2e-08 62.8 115 36.5
Actinidia09941 Actinidia chinensis HOM05D000364 ORTHO05D000235 2.9e-08 62.4 119 36.1
FAN25G1191 Fragaria x ananassa HOM05D000364 ORTHO05D000235 2.9e-08 62.4 145 37.9
VMungo0251G1957 Vigna mungo HOM05D000364 ORTHO05D000235 2.9e-08 62.4 165 33.9
Actinidia26970 Actinidia chinensis HOM05D000364 ORTHO05D000235 3.8e-08 62.0 117 37.6
arahy.Tifrunner.gnm1.ann1.830P15 Arachis hypogaea HOM05D000364 ORTHO05D000235 3.8e-08 62.0 155 32.9
FAN21G3822 Fragaria x ananassa HOM05D000364 ORTHO05D000235 5.0e-08 61.6 161 36.6
SGA_v2.0_scaffold159G37708 Striga asiatica HOM05D000364 ORTHO05D000235 5.0e-08 61.6 124 36.3
CSS0023418 Camellia sinensis var. sinensis HOM05D000364 ORTHO05D000235 6.5e-08 61.2 119 40.3
Gohir.D01G058400 Gossypium hirsutum HOM05D000364 ORTHO05D000235 1.1e-07 60.5 153 37.3
HanXRQChr05g0130951 Helianthus annuus HOM05D000364 ORTHO05D000235 1.5e-07 60.1 107 37.4
Sabra11G0026100 Salix brachista HOM05D000364 ORTHO05D000235 1.5e-07 60.1 144 35.4
ClCG01G022330 Citrullus lanatus HOM05D000364 ORTHO05D000235 1.9e-07 59.7 94 44.7
Sabra11G0022500 Salix brachista HOM05D000364 ORTHO05D000235 1.9e-07 59.7 144 35.4
SalBow8G1079 Salvia bowleyana HOM05D000364 ORTHO05D000235 1.9e-07 59.7 129 37.2
Gorai.002G079200 Gossypium raimondii HOM05D000364 ORTHO05D000235 2.5e-07 59.3 149 36.9
CDE02G1300 Ceratophyllum demersum HOM05D000364 ORTHO05D000235 3.2e-07 58.9 119 32.8
Phvul.002G219600 Phaseolus vulgaris HOM05D000364 ORTHO05D000235 3.2e-07 58.9 163 33.7
Sed0001852 Sechium edule HOM05D000364 ORTHO05D000235 3.2e-07 58.9 95 45.3
Medtr2g011070 Medicago truncatula HOM05D000364 ORTHO05D000235 4.2e-07 58.5 109 39.4
HanXRQChr15g0482801 Helianthus annuus HOM05D000364 ORTHO05D000235 5.5e-07 58.2 104 36.5
Glyma.13G249800 Glycine max HOM05D000364 ORTHO05D000235 9.4e-07 57.4 112 35.7
Atru.chr2.3082 Acer truncatum HOM05D000364 ORTHO05D000235 1.2e-06 57.0 137 35.0
Atru.chr2.3123 Acer truncatum HOM05D000364 ORTHO05D000235 1.2e-06 57.0 137 35.0
VMungo0540G1365 Vigna mungo HOM05D000364 ORTHO05D000235 1.2e-06 57.0 161 32.3
Glyma.15G064500 Glycine max HOM05D000364 ORTHO05D000235 1.6e-06 56.6 120 35.0
TWI38G1625 Tripterygium wilfordii HOM05D000364 ORTHO05D000235 1.6e-06 56.6 154 34.4
MELO3C007341.2 Cucumis melo HOM05D000364 ORTHO05D000235 2.1e-06 56.2 88 42.0
Eucgr.E03614 Eucalyptus grandis HOM05D000364 ORTHO05D000235 2.1e-06 56.2 162 31.5
CsaV3_6G049510 Cucumis sativus L. HOM05D000364 ORTHO05D000235 2.7e-06 55.8 88 40.9
FvH4_3g03200 Fragaria vesca HOM05D000364 ORTHO05D000235 2.7e-06 55.8 112 39.3
Glyma.07G188100 Glycine max HOM05D000364 ORTHO05D000235 2.7e-06 55.8 148 33.1
Lj3g0002883 Lotus japonicus HOM05D000364 ORTHO05D000235 2.7e-06 55.8 119 39.5
CANSAT56G3627 Cannabis sativa HOM05D000364 ORTHO05D000235 4.7e-06 55.1 165 33.3
THA.LOC104804528 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 4.7e-06 55.1 140 30.7
THA.LOC104816918 Tarenaya hassleriana HOM05D000364 ORTHO05D000235 4.7e-06 55.1 140 30.7
BcaB07g31280 Brassica carinata HOM05D000364 ORTHO05D000235 8.0e-06 54.3 106 36.8


User provided reference genes

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