Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 3.7e-61 238.0 122 100.0
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 3.6e-24 115.2 101 65.3
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.1e-19 99.4 96 57.3
Rhsim13G0163300 Rhododendron simsii HOM05D007156 ORTHO05D003871 9.0e-15 84.0 89 51.7
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 5.4e-12 74.7 67 55.2
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 9.3e-12 73.9 66 56.1
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 2.7e-11 72.4 97 44.3
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.3e-10 70.1 52 59.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.8e-10 69.7 51 58.8
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 2.3e-10 69.3 46 67.4
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 3.0e-10 68.9 67 53.7
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.0e-10 68.9 52 59.6
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.0e-10 68.9 87 44.8
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.0e-10 68.9 87 44.8
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.0e-10 68.9 49 61.2
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.9e-10 68.6 48 62.5
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 3.9e-10 68.6 65 53.8
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.1e-10 68.2 58 56.9
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 5.1e-10 68.2 48 64.6
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.7e-10 67.4 89 39.3
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.7e-10 67.4 89 39.3
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 8.7e-10 67.4 46 65.2
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 8.7e-10 67.4 46 63.0
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.1e-09 67.0 71 53.5
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.1e-09 67.0 48 62.5
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.1e-09 67.0 93 41.9
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.5e-09 66.6 50 58.0
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.5e-09 66.6 100 45.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.5e-09 66.6 76 46.1
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.5e-09 66.6 46 60.9
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.5e-09 65.9 50 60.0
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 4.3e-09 65.1 98 41.8
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 5.6e-09 64.7 92 41.3
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 5.6e-09 64.7 59 59.3
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.6e-09 63.9 72 47.2
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.3e-08 63.5 47 63.8
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 1.3e-08 63.5 50 56.0
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 1.3e-08 63.5 67 50.7
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 1.6e-08 63.2 45 62.2
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.6e-08 63.2 47 59.6
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.8e-08 62.4 88 39.8
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 2.8e-08 62.4 82 40.2
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 2.8e-08 62.4 62 53.2
Ah.14g088550 Amaranthus hybridus HOM05D012748 ORTHO05D014783 3.7e-08 62.0 68 48.5
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.8e-08 61.6 40 72.5
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 6.2e-08 61.2 56 57.1
COL.COLO4_31669 Corchorus olitorius HOM05D007156 ORTHO05D014783 8.1e-08 60.8 93 43.0
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 8.1e-08 60.8 49 57.1
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 8.1e-08 60.8 44 59.1
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.1e-07 60.5 53 56.6
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 1.1e-07 60.5 81 37.0
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.4e-07 60.1 85 49.4
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 1.4e-07 60.1 52 61.5
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.8e-07 59.7 67 50.7
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.8e-07 59.7 50 54.0
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.4e-07 59.3 50 56.0
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.4e-07 59.3 49 55.1
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 3.1e-07 58.9 56 53.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 3.1e-07 58.9 55 54.5
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.0e-07 58.5 66 50.0
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.0e-07 58.5 55 52.7
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 5.3e-07 58.2 70 45.7
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 5.3e-07 58.2 53 52.8
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 5.3e-07 58.2 52 53.8
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.3e-07 58.2 50 52.0
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 6.9e-07 57.8 43 62.8
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 6.9e-07 57.8 54 42.6
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 9.0e-07 57.4 52 50.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 9.0e-07 57.4 46 54.3
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 9.0e-07 57.4 55 50.9
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.2e-06 57.0 52 55.8
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.2e-06 57.0 56 51.8
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.5e-06 56.6 48 58.3
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 2.0e-06 56.2 52 51.9
ECA236G2635 Erigeron canadensis HOM05D062241 ORTHO05D045200 2.0e-06 56.2 92 37.0
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 2.6e-06 55.8 65 49.2
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 3.4e-06 55.5 46 58.7
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 3.4e-06 55.5 84 38.1
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 4.5e-06 55.1 48 54.2
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 5.8e-06 54.7 51 51.0
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 5.8e-06 54.7 40 60.0
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 5.8e-06 54.7 55 49.1
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 5.8e-06 54.7 84 41.7
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 5.8e-06 54.7 93 34.4
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 5.8e-06 54.7 45 53.3
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 7.6e-06 54.3 44 56.8
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 7.6e-06 54.3 56 48.2
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 7.6e-06 54.3 71 46.5
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.0e-05 53.9 43 60.5
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.0e-05 53.9 84 39.3
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.0e-05 53.9 53 50.9
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 1.0e-05 53.9 63 47.6


User provided reference genes

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