Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18946 Davidia involucrata HOM05D026595 ORTHO05D003202 2.0e-163 578.9 277 100.0
Dinv14038 Davidia involucrata HOM05D002035 ORTHO05D002032 1.6e-51 207.2 128 82.0
Dinv05665 Davidia involucrata HOM05D000082 ORTHO05D003202 2.2e-48 196.8 136 75.7
CSS0049983 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D003202 5.7e-25 119.0 162 43.8
CSS0009592 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D003202 1.7e-24 117.5 162 43.8
CSS0021763 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D003202 1.1e-23 114.8 146 44.5
Ciclev10005915m.g Citrus clementina HOM05D000082 ORTHO05D003202 3.8e-21 106.3 145 45.5
CSS0023314 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D003202 6.5e-21 105.5 131 49.6
TAR365G0736 Trochodendron aralioides HOM05D000082 ORTHO05D003202 7.2e-20 102.1 140 44.3
TPR.G26090 Trifolium pratense HOM05D000082 ORTHO05D003202 1.6e-19 100.9 145 43.4
TAR365G0276 Trochodendron aralioides HOM05D000082 ORTHO05D003202 4.7e-19 99.4 138 44.2
Glyma.20G149700 Glycine max HOM05D003638 ORTHO05D003202 6.1e-19 99.0 145 40.7
arahy.Tifrunner.gnm1.ann1.IQ39GT Arachis hypogaea HOM05D003638 ORTHO05D003202 8.0e-19 98.6 142 38.7
Rhsim04G0198500 Rhododendron simsii HOM05D060634 ORTHO05D003202 8.0e-19 98.6 148 45.9
Medtr1g103050 Medicago truncatula HOM05D000082 ORTHO05D003202 1.8e-18 97.4 142 41.5
Phvul.007G061000 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 4.0e-18 96.3 146 41.8
Atru.chr4.2402 Acer truncatum HOM05D000082 ORTHO05D003202 2.6e-17 93.6 146 39.7
Lj5g0019666 Lotus japonicus HOM05D003638 ORTHO05D003202 4.4e-17 92.8 138 42.8
TAR365G1153 Trochodendron aralioides HOM05D026595 ORTHO05D003202 4.4e-17 92.8 107 47.7
Atru.chr4.2378 Acer truncatum HOM05D000082 ORTHO05D003202 2.8e-16 90.1 146 39.0
VMungo0720G2634 Vigna mungo HOM05D003638 ORTHO05D003202 2.8e-16 90.1 151 38.4
PSO782G5266 Papaver somniferum HOM05D000082 ORTHO05D003202 3.7e-16 89.7 156 38.5
Psat6g205400 Pisum sativum HOM05D000082 ORTHO05D003202 6.3e-16 89.0 139 40.3
Glyma.10G244900 Glycine max HOM05D003638 ORTHO05D003202 8.3e-16 88.6 146 39.7
Aqoxy2G03449 Aquilegia oxysepala HOM05D000082 ORTHO05D003202 5.4e-15 85.9 103 47.6
PSO478G1138 Papaver somniferum HOM05D000082 ORTHO05D003202 4.5e-14 82.8 150 36.7
Prupe.1G020100 Prunus persica HOM05D000082 ORTHO05D003202 2.3e-13 80.5 138 35.5
PSO170G0661 Papaver somniferum HOM05D003638 ORTHO05D003202 2.9e-13 80.1 144 37.5
MBI11_g35353_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D003202 1.5e-12 77.8 142 38.0
Ciclev10007103m.g Citrus clementina HOM05D003638 ORTHO05D003202 3.0e-10 70.1 110 36.4
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 4.0e-10 69.7 162 33.3
Dinv03672 Davidia involucrata HOM05D026595 ORTHO05D185446 1.2e-09 68.2 38 92.1
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 1.3e-08 64.7 98 36.7
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.1e-07 61.6 117 34.2
Dinv02696 Davidia involucrata HOM05D026595 ORTHO05D184290 1.4e-07 61.2 46 67.4
QL10p015716 Quercus lobata HOM05D000082 ORTHO05D000038 1.4e-07 61.2 61 44.3
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 1.8e-07 60.8 161 28.0
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 1.8e-07 60.8 128 28.9
Sed0010134 Sechium edule HOM05D000082 ORTHO05D008126 4.1e-07 59.7 109 29.4
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 4.1e-07 59.7 111 37.8
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 4.1e-07 59.7 111 29.7
MELO3C018712.2 Cucumis melo HOM05D000082 ORTHO05D008126 5.4e-07 59.3 43 48.8
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 5.4e-07 59.3 110 33.6
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 5.4e-07 59.3 109 30.3
Lalb_Chr03g0030051 Lupinus albus HOM05D000082 ORTHO05D008126 9.2e-07 58.5 38 50.0
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 9.2e-07 58.5 99 37.4
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 1.2e-06 58.2 170 28.8
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.6e-06 57.8 108 33.3
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.6e-06 57.8 108 32.4
arahy.Tifrunner.gnm1.ann1.05YYMQ Arachis hypogaea HOM05D000082 ORTHO05D008126 1.6e-06 57.8 39 48.7
arahy.Tifrunner.gnm1.ann1.W39MEW Arachis hypogaea HOM05D000082 ORTHO05D008126 1.6e-06 57.8 39 48.7
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 1.6e-06 57.8 148 29.7
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 2.0e-06 57.4 98 35.7
CDE02G4291 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 2.0e-06 57.4 58 41.4
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 2.0e-06 57.4 161 31.7
ClCG07G002560 Citrullus lanatus HOM05D000082 ORTHO05D008126 2.7e-06 57.0 42 47.6
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 2.7e-06 57.0 149 28.2
Gohir.A05G317400 Gossypium hirsutum HOM05D000082 ORTHO05D008126 2.7e-06 57.0 95 31.6
TPR.G25971 Trifolium pratense HOM05D000082 ORTHO05D008126 2.7e-06 57.0 45 44.4
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 3.5e-06 56.6 135 28.1
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 3.5e-06 56.6 57 40.4
Glyma.06G272400 Glycine max HOM05D000082 ORTHO05D008126 3.5e-06 56.6 142 28.2
LjContig00564g0011853 Lotus japonicus HOM05D000082 ORTHO05D008126 3.5e-06 56.6 39 51.3
Psat7g161960 Pisum sativum HOM05D000082 ORTHO05D008126 3.5e-06 56.6 45 44.4
Sabra14G0105100 Salix brachista HOM05D000082 ORTHO05D008126 3.5e-06 56.6 38 52.6
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 3.5e-06 56.6 38 55.3
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 4.6e-06 56.2 132 31.8
A10p28530 Brassica napus HOM05D000082 ORTHO05D000038 4.6e-06 56.2 48 43.8
BraA10t44902Z Brassica rapa HOM05D000082 ORTHO05D000038 4.6e-06 56.2 48 43.8
Gohir.D10G233400 Gossypium hirsutum HOM05D000082 ORTHO05D001639 4.6e-06 56.2 58 41.4
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 4.6e-06 56.2 116 32.8
ATR0665G404 Amborella trichopoda HOM05D000082 ORTHO05D003202 5.9e-06 55.8 151 31.1
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 5.9e-06 55.8 136 30.9
Gorai.009G342500 Gossypium raimondii HOM05D000082 ORTHO05D008126 5.9e-06 55.8 95 31.6
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 5.9e-06 55.8 133 28.6
Thecc.02G213000 Theobroma cacao HOM05D000082 ORTHO05D008126 5.9e-06 55.8 38 50.0
Ciclev10032875m.g Citrus clementina HOM05D000082 ORTHO05D000038 7.8e-06 55.5 61 37.7
Lsat_1_v5_gn_5_94401 Lactuca sativa HOM05D003638 ORTHO05D003202 7.8e-06 55.5 111 32.4
Psat7g162040 Pisum sativum HOM05D000082 ORTHO05D008126 7.8e-06 55.5 142 30.3
THA.LOC104803029 Tarenaya hassleriana HOM05D000082 ORTHO05D008126 7.8e-06 55.5 45 44.4


User provided reference genes

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