Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 1.8e-111 406.0 217 100.0
Dinv12363 Davidia involucrata HOM05D036176 ORTHO05D007177 8.4e-32 141.4 72 97.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.2e-22 110.9 111 54.1
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 4.6e-22 109.0 71 77.5
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 9.7e-12 74.7 47 80.9
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 4.1e-10 69.3 48 70.8
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 9.1e-10 68.2 48 70.8
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.2e-09 67.8 59 59.3
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 1.2e-09 67.8 47 72.3
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.5e-09 67.4 47 72.3
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.0e-09 67.0 47 74.5
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 4.5e-09 65.9 47 70.2
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 7.7e-09 65.1 41 70.7
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.3e-08 64.3 47 70.2
Dinv26476 Davidia involucrata HOM05D036176 ORTHO05D006352 1.7e-08 63.9 41 70.7
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.7e-08 63.9 51 62.7
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.2e-08 63.5 48 68.8
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 2.2e-08 63.5 74 50.0
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 66.0
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 66.0
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 66.0
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 66.0
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 72.3
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.2e-08 63.5 41 73.2
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 66.0
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 2.2e-08 63.5 47 70.2
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.9e-08 63.2 45 62.2
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.9e-08 63.2 40 72.5
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.9e-08 63.2 40 72.5
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 3.8e-08 62.8 40 75.0
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 3.8e-08 62.8 51 62.7
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 5.0e-08 62.4 47 66.0
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 5.0e-08 62.4 41 70.7
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 5.0e-08 62.4 47 70.2
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 68.1
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 6.5e-08 62.0 59 54.2
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 6.5e-08 62.0 47 66.0
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.5e-08 61.6 47 68.1
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.1e-07 61.2 47 66.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 1.1e-07 61.2 47 63.8
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 1.4e-07 60.8 40 67.5
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.4e-07 60.8 47 63.8
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.9e-07 60.5 47 66.0
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.9e-07 60.5 47 66.0
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.9e-07 60.5 41 70.7
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 2.5e-07 60.1 47 66.0
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 2.5e-07 60.1 48 60.4
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 3.2e-07 59.7 47 61.7
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 3.2e-07 59.7 40 72.5
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 5.5e-07 58.9 47 61.7
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 7.2e-07 58.5 41 68.3
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 7.2e-07 58.5 47 61.7
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 9.4e-07 58.2 47 61.7
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 9.4e-07 58.2 47 63.8
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 9.4e-07 58.2 47 63.8
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 9.4e-07 58.2 47 61.7
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.2e-06 57.8 47 63.8
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.2e-06 57.8 47 61.7
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.6e-06 57.4 54 55.6
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.6e-06 57.4 47 61.7
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 2.1e-06 57.0 47 61.7
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 2.7e-06 56.6 47 59.6
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 3.6e-06 56.2 48 58.3
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 3.6e-06 56.2 60 50.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 3.6e-06 56.2 47 70.2
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 4.7e-06 55.8 41 63.4
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 4.7e-06 55.8 47 59.6
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 7.9e-06 55.1 47 68.1
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 7.9e-06 55.1 47 68.1


User provided reference genes

Program Settings