Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 3.9e-228 794.7 457 100.0
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 8.7e-204 713.8 422 90.8
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.2e-148 528.5 423 71.9
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.2e-148 528.5 423 71.9
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.7e-141 506.1 434 65.2
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.0e-140 504.2 444 64.4
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 5.7e-139 498.4 430 64.9
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 3.7e-138 495.7 430 64.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.4e-137 493.8 440 62.7
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.8e-137 493.4 428 65.4
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 3.8e-135 485.7 423 63.6
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 6.5e-135 485.0 434 64.3
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 8.8e-132 474.6 452 60.8
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 2.2e-130 469.9 436 63.1
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 3.1e-129 466.1 422 65.2
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 7.8e-128 461.5 422 60.7
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 3.8e-127 459.1 431 63.8
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.8e-127 459.1 428 60.5
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 9.5e-126 454.5 437 60.2
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 2.1e-125 453.4 433 60.5
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 4.9e-122 442.2 424 57.8
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 8.3e-122 441.4 441 59.2
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.4e-121 440.7 432 59.5
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 5.4e-121 438.7 431 58.5
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.6e-120 437.2 433 59.6
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 4.6e-120 435.6 423 57.9
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.3e-119 434.1 468 55.3
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 1.3e-119 434.1 434 59.2
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 2.3e-119 433.3 430 57.4
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 3.0e-119 433.0 441 56.0
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 8.6e-119 431.4 435 59.8
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.5e-118 430.6 427 56.2
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.5e-118 430.6 443 58.0
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 1.9e-118 430.3 436 57.8
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.3e-118 429.1 435 58.2
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.1e-117 426.8 462 56.1
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 4.7e-117 425.6 425 56.9
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 6.2e-117 425.2 430 59.8
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.8e-116 423.7 425 58.1
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.3e-116 423.3 427 56.9
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.3e-116 423.3 424 57.3
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 6.8e-116 421.8 440 56.4
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 8.9e-116 421.4 450 55.6
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.2e-115 421.0 424 57.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 2.0e-115 420.2 433 55.9
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 2.6e-115 419.9 337 68.0
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.4e-115 419.5 437 57.0
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 3.4e-115 419.5 427 61.1
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 5.8e-115 418.7 425 58.1
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 8.3e-114 414.8 430 60.7
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 4.1e-113 412.5 431 58.7
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 7.0e-113 411.8 432 57.2
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 7.0e-113 411.8 426 58.7
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.2e-112 411.0 436 56.7
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 2.0e-112 410.2 424 61.6
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 3.5e-112 409.5 438 53.9
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 4.6e-112 409.1 444 53.4
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 7.8e-112 408.3 423 54.6
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.3e-111 407.5 432 56.9
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.3e-111 407.5 436 55.5
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.0e-111 406.4 444 57.0
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 6.6e-111 405.2 427 56.7
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.1e-110 404.4 424 56.8
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.6e-110 402.1 433 57.5
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 5.6e-110 402.1 430 56.5
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 9.5e-110 401.4 433 54.0
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.2e-109 401.0 427 54.1
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.1e-109 400.2 439 56.9
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 2.1e-109 400.2 430 54.7
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.6e-109 399.4 433 53.8
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 4.7e-109 399.1 425 54.1
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 3.1e-108 396.4 432 53.5
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 3.1e-108 396.4 423 54.1
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 5.2e-108 395.6 425 53.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 2.0e-107 393.7 424 55.0
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 3.4e-107 392.9 424 53.5
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 5.8e-107 392.1 430 53.5
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 5.8e-107 392.1 409 55.0
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 7.5e-107 391.7 429 52.0
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 9.9e-107 391.3 434 55.3
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.3e-106 391.0 428 57.2
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 3.7e-106 389.4 411 54.7
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 1.4e-105 387.5 427 54.6
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 9.2e-105 384.8 429 57.3
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 4.6e-104 382.5 434 51.8
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 7.8e-104 381.7 429 53.6
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 1.0e-103 381.3 445 51.7
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.0e-103 381.3 428 53.5
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 3.0e-103 379.8 312 62.8
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.5e-102 377.5 424 53.3
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 2.1e-101 373.6 321 61.4
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 2.8e-101 373.2 447 49.9
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 4.7e-101 372.5 424 52.6
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 8.1e-101 371.7 439 51.3
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.8e-100 370.5 435 52.6
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.8e-100 370.5 427 50.6
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 5.2e-100 369.0 427 50.4
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 5.8e-99 365.5 431 50.6
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 9.9e-99 364.8 430 54.0
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 5.4e-97 359.0 432 50.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 6.2e-93 345.5 428 50.5
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.8e-92 344.0 397 52.6
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 4.4e-91 339.3 297 60.9
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 9.6e-86 321.6 428 46.5
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.5e-83 314.3 319 57.1
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 4.9e-82 309.3 418 45.7
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.4e-76 291.2 333 52.3
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 6.7e-71 272.3 344 48.5
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 4.8e-69 266.2 453 41.1
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 9.4e-57 225.3 303 44.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.3e-53 214.9 351 43.0
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 5.5e-49 199.5 433 36.5
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 2.7e-48 197.2 371 35.6
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 2.6e-46 190.7 269 42.8
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 9.7e-46 188.7 422 33.9
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 8.2e-45 185.7 265 44.2
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 2.0e-43 181.0 108 88.0
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.2e-40 171.8 159 60.4
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.6e-40 171.4 149 63.1
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 5.2e-39 166.4 155 52.9
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 4.1e-36 156.8 145 61.4
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 7.2e-33 146.0 111 69.4
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 7.2e-33 146.0 161 52.2
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 2.3e-31 141.0 112 63.4
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 2.6e-30 137.5 185 43.8
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 9.1e-28 129.0 135 53.3
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.2e-27 128.6 137 51.1
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 5.7e-22 109.8 95 55.8
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.6e-14 84.3 247 26.3
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 6.1e-08 63.2 41 80.5
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 5.2e-07 60.1 72 45.8
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 8.9e-07 59.3 53 52.8
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 8.9e-07 59.3 53 52.8
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 1.5e-06 58.5 98 31.6
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 1.5e-06 58.5 112 32.1
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.0e-06 58.2 57 45.6
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 2.0e-06 58.2 54 44.4
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.4e-06 57.0 103 36.9
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 52.1
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 54.2
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 54.2
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 54.2
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 5.8e-06 56.6 52 48.1
Thecc.01G222600 Theobroma cacao HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 54.2
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 7.5e-06 56.2 56 48.2
Lsat_1_v5_gn_9_13141 Lactuca sativa HOM05D002747 ORTHO05D003069 9.8e-06 55.8 56 50.0
Lj3g0012882 Lotus japonicus HOM05D002747 ORTHO05D003069 9.8e-06 55.8 49 49.0


User provided reference genes

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