Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 8.6e-140 500.4 261 100.0
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 6.0e-93 344.7 287 66.9
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 1.5e-91 340.1 287 66.6
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.3e-90 337.0 286 66.8
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 1.6e-82 310.1 293 59.7
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 4.5e-80 302.0 288 61.8
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 1.8e-76 290.0 286 61.9
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 5.1e-76 288.5 282 59.2
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 4.8e-74 282.0 287 55.4
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 2.4e-73 279.6 284 54.2
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 6.9e-73 278.1 284 58.8
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 5.9e-72 275.0 272 59.2
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 2.9e-71 272.7 282 57.4
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.1e-70 270.8 291 56.0
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 7.2e-70 268.1 282 54.3
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 2.7e-69 266.2 287 56.1
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 8.8e-68 261.2 279 55.2
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.0e-67 260.0 288 55.9
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.3e-66 257.3 285 51.6
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 8.2e-66 254.6 283 52.3
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 1.1e-65 254.2 271 53.5
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 2.4e-65 253.1 285 51.2
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 2.6e-64 249.6 265 56.6
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 2.2e-63 246.5 294 49.7
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 3.8e-63 245.7 282 52.5
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 6.5e-63 245.0 270 53.7
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 1.9e-62 243.4 300 52.3
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 4.2e-62 242.3 317 51.7
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 6.1e-61 238.4 294 49.7
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 6.1e-61 238.4 284 51.4
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.8e-60 236.9 287 49.5
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 1.8e-60 236.9 277 50.2
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 5.2e-60 235.3 325 48.9
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 8.8e-60 234.6 284 49.3
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 2.6e-59 233.0 282 52.5
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 7.5e-59 231.5 295 48.1
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 3.7e-58 229.2 289 48.1
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 6.3e-58 228.4 315 47.3
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.4e-57 227.3 301 48.2
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 7.0e-57 224.9 311 48.6
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 1.7e-55 220.3 284 50.7
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 5.0e-55 218.8 351 43.6
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 5.0e-55 218.8 275 48.0
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 1.1e-54 217.6 305 49.2
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 1.5e-54 217.2 309 44.7
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 4.2e-54 215.7 281 47.7
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.2e-54 214.9 279 49.8
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 9.4e-54 214.5 288 50.3
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 1.2e-53 214.2 289 48.8
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 1.6e-53 213.8 299 48.5
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.6e-53 213.8 315 46.7
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 3.6e-53 212.6 284 48.9
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 1.0e-52 211.1 284 45.1
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 4.0e-52 209.1 276 48.2
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 8.8e-52 208.0 295 44.7
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 4.4e-51 205.7 360 38.9
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 1.3e-50 204.1 293 43.7
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 3.7e-50 202.6 291 45.0
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.8e-50 202.2 279 46.2
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 1.8e-49 200.3 278 45.0
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 2.4e-49 199.9 284 43.7
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 3.1e-49 199.5 205 54.6
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 7.0e-49 198.4 241 51.9
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 2.7e-48 196.4 288 44.1
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 6.5e-47 191.8 296 41.6
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 6.5e-47 191.8 285 44.9
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.2e-46 189.5 150 69.3
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 4.2e-46 189.1 243 50.2
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 1.6e-45 187.2 306 45.1
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.4e-44 184.1 282 43.6
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 2.6e-43 179.9 282 45.7
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 7.5e-43 178.3 287 42.9
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 3.7e-42 176.0 254 46.1
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 5.4e-41 172.2 278 43.9
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 7.0e-41 171.8 284 43.3
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 7.0e-41 171.8 291 39.5
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 9.2e-41 171.4 273 44.3
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 1.6e-40 170.6 277 43.0
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 7.7e-40 168.3 277 43.7
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 5.0e-39 165.6 298 40.9
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 8.6e-39 164.9 284 40.5
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 1.1e-38 164.5 273 43.2
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 1.9e-38 163.7 286 40.9
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 1.2e-37 161.0 294 39.5
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 4.7e-37 159.1 220 47.7
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 8.0e-37 158.3 251 42.2
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 4.0e-36 156.0 282 38.7
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.4e-35 152.9 112 70.5
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 3.7e-34 149.4 290 42.4
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 8.3e-34 148.3 106 76.4
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.1e-33 147.9 243 42.0
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 1.4e-33 147.5 241 42.3
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.4e-33 146.7 239 43.1
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 6.6e-31 138.7 285 40.4
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 2.6e-27 126.7 319 36.1
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 9.8e-27 124.8 252 37.7
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.9e-25 120.6 92 67.4
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 9.2e-25 118.2 305 36.4
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 9.2e-25 118.2 283 35.7
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 2.7e-24 116.7 236 40.3
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 8.6e-23 111.7 228 36.8
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 1.1e-22 111.3 252 34.9
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 1.5e-22 110.9 195 41.5
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.2e-21 107.8 240 34.6
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.8e-21 106.7 193 43.0
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 1.8e-20 104.0 335 32.8
Zm00001eb225260 Zea mays HOM05D005864 ORTHO05D006770 2.0e-19 100.5 138 44.2
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 3.4e-19 99.8 244 34.0
TAR626G0331 Trochodendron aralioides HOM05D005864 ORTHO05D006770 2.2e-18 97.1 70 74.3
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.1e-17 94.7 150 40.0
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 3.9e-15 86.3 241 33.6
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 4.3e-14 82.8 253 30.8
AagrBONN_evm.TU.Sc2ySwM_369.130 Anthoceros agrestis HOM05D005864 ORTHO05D006770 2.8e-13 80.1 219 31.5
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 8.1e-13 78.6 264 32.2
CDE05G1677 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 2.3e-12 77.0 49 69.4
Lsat_1_v5_gn_9_59080 Lactuca sativa HOM05D005864 ORTHO05D006770 1.2e-11 74.7 143 39.9
Pp3c7_5470 Physcomitrium patens HOM05D005864 ORTHO05D006770 5.8e-11 72.4 263 29.3
TAR375G0046 Trochodendron aralioides HOM05D005864 ORTHO05D006770 7.6e-11 72.0 49 65.3
TAR372G0002 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.7e-10 70.9 49 65.3
TAR353G0003 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.2e-09 66.6 46 65.2
TPR.G1791 Trifolium pratense HOM05D005864 ORTHO05D006770 2.7e-08 63.5 70 55.7
SMO356G0193 Selaginella moellendorffii HOM05D005864 ORTHO05D006770 1.9e-06 57.4 232 31.5


User provided reference genes

Program Settings