Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18511 Davidia involucrata HOM05D050167 ORTHO05D185820 4.6e-55 217.6 107 100.0
Dinv28204 Davidia involucrata HOM05D050167 ORTHO05D183664 3.3e-45 184.9 107 89.7
Dinv27176 Davidia involucrata HOM05D001159 ORTHO05D001712 7.6e-10 67.4 50 78.0
Aa31LG1G19130 Aethionema arabicum HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BcaB02g08629 Brassica carinata HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BcaC01g00218 Brassica carinata HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BcaC02g09352 Brassica carinata HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BcaNung05573 Brassica carinata HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
A04p07970 Brassica napus HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
A08p24250 Brassica napus HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
C03p77040 Brassica napus HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BolC3t19956H Brassica oleracea HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BraA04t16486Z Brassica rapa HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
BraA08t34380Z Brassica rapa HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
Thhalv10024465m.g Eutrema salsugineum HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
THA.LOC104804778 Tarenaya hassleriana HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
THA.LOC104808675 Tarenaya hassleriana HOM05D001159 ORTHO05D001712 2.9e-09 65.5 50 74.0
Actinidia20853 Actinidia chinensis HOM05D001159 ORTHO05D001712 3.8e-09 65.1 78 53.8
Actinidia35824 Actinidia chinensis HOM05D001159 ORTHO05D001712 3.8e-09 65.1 78 53.8
AL7G42220 Arabidopsis lyrata HOM05D001159 ORTHO05D001712 3.8e-09 65.1 50 74.0
AT4G14160 Arabidopsis thaliana HOM05D001159 ORTHO05D001712 3.8e-09 65.1 50 74.0
Carub.0007s2826 Capsella rubella HOM05D001159 ORTHO05D001712 3.8e-09 65.1 50 74.0
Atru.chr3.1767 Acer truncatum HOM05D001159 ORTHO05D001712 6.5e-09 64.3 50 72.0
C04p41660 Brassica napus HOM05D001159 ORTHO05D001712 8.4e-09 63.9 50 72.0
BolC4t25745H Brassica oleracea HOM05D001159 ORTHO05D001712 8.4e-09 63.9 50 72.0
Sp7g12030 Schrenkiella parvula HOM05D001159 ORTHO05D001712 8.4e-09 63.9 50 72.0
AL1G15360 Arabidopsis lyrata HOM05D001159 ORTHO05D001712 1.1e-08 63.5 50 72.0
AT1G05520 Arabidopsis thaliana HOM05D001159 ORTHO05D001712 1.1e-08 63.5 50 72.0
Eucgr.I00719 Eucalyptus grandis HOM05D001159 ORTHO05D001712 1.1e-08 63.5 50 74.0
Thhalv10006857m.g Eutrema salsugineum HOM05D001159 ORTHO05D001712 1.1e-08 63.5 50 72.0
Sp1g04390 Schrenkiella parvula HOM05D001159 ORTHO05D001712 1.1e-08 63.5 50 72.0
Sp4g14370 Schrenkiella parvula HOM05D001159 ORTHO05D001712 1.4e-08 63.2 50 68.0
THA.LOC104800952 Tarenaya hassleriana HOM05D001159 ORTHO05D001712 1.4e-08 63.2 50 72.0
AT3G23660 Arabidopsis thaliana HOM05D001159 ORTHO05D001712 1.9e-08 62.8 50 72.0
Carub.0001s0484 Capsella rubella HOM05D001159 ORTHO05D001712 2.5e-08 62.4 50 70.0
Rhsim02G0069600 Rhododendron simsii HOM05D001159 ORTHO05D001712 2.5e-08 62.4 50 72.0
Dinv32170 Davidia involucrata HOM05D001159 ORTHO05D001712 3.2e-08 62.0 50 72.0
CSS0017086 Camellia sinensis var. sinensis HOM05D001159 ORTHO05D001712 4.2e-08 61.6 78 50.0
CSS0047137 Camellia sinensis var. sinensis HOM05D001159 ORTHO05D001712 4.2e-08 61.6 78 50.0
AL3G38520 Arabidopsis lyrata HOM05D001159 ORTHO05D001712 5.5e-08 61.2 50 70.0
Carub.0003s2396 Capsella rubella HOM05D001159 ORTHO05D001712 5.5e-08 61.2 50 70.0
Sc13g0000550 Simmondsia chinensis HOM05D001159 ORTHO05D001712 5.5e-08 61.2 50 66.0
Sc19g0007420 Simmondsia chinensis HOM05D001159 ORTHO05D001712 5.5e-08 61.2 50 66.0
TAR362G0563 Trochodendron aralioides HOM05D001159 ORTHO05D001712 5.5e-08 61.2 43 74.4
CSS0038444 Camellia sinensis var. sinensis HOM05D001159 ORTHO05D001712 7.1e-08 60.8 78 50.0
Cpa.g.sc157.12 Carica papaya HOM05D001159 ORTHO05D001712 7.1e-08 60.8 43 69.8
Aa31LG9G3220 Aethionema arabicum HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 70.0
ClCG05G007090 Citrullus lanatus HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 70.0
Ciclev10004373m.g Citrus clementina HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 68.0
Duzib151G0904 Durio zibethinus HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 66.0
FAN17G0205 Fragaria x ananassa HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 68.0
Gohir.A02G016800 Gossypium hirsutum HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 66.0
PGR142G4355 Punica granatum HOM05D001159 ORTHO05D001712 9.3e-08 60.5 50 68.0
Actinidia13836 Actinidia chinensis HOM05D001159 ORTHO05D001712 1.2e-07 60.1 50 70.0
Gohir.A09G208000 Gossypium hirsutum HOM05D001159 ORTHO05D001712 1.2e-07 60.1 50 68.0
Gorai.006G225300 Gossypium raimondii HOM05D001159 ORTHO05D001712 1.2e-07 60.1 50 68.0
Hma1.2p1_0944F.1_g239860 Hydrangea macrophylla HOM05D001159 ORTHO05D001712 1.2e-07 60.1 78 47.4
Duzib268G1692 Durio zibethinus HOM05D001159 ORTHO05D001712 1.6e-07 59.7 50 68.0
Ah.08g210050 Amaranthus hybridus HOM05D001159 ORTHO05D001712 2.1e-07 59.3 50 66.0
Gohir.D02G113300 Gossypium hirsutum HOM05D001159 ORTHO05D001712 2.1e-07 59.3 43 74.4
Gorai.005G128200 Gossypium raimondii HOM05D001159 ORTHO05D001712 2.1e-07 59.3 43 74.4
Manes.05G198700 Manihot esculenta HOM05D001159 ORTHO05D001712 2.1e-07 59.3 50 68.0
PGR142G4399 Punica granatum HOM05D001159 ORTHO05D001712 2.1e-07 59.3 50 68.0
BcaB03g13444 Brassica carinata HOM05D001159 ORTHO05D001712 2.7e-07 58.9 43 67.4
Gohir.D02G018400 Gossypium hirsutum HOM05D001159 ORTHO05D001712 2.7e-07 58.9 50 64.0
Gorai.005G022700 Gossypium raimondii HOM05D001159 ORTHO05D001712 2.7e-07 58.9 50 64.0
TAR633G2384 Trochodendron aralioides HOM05D001159 ORTHO05D001712 2.7e-07 58.9 34 82.4
MELO3C006782.2 Cucumis melo HOM05D001159 ORTHO05D001712 3.5e-07 58.5 50 68.0
FvH4_4g12850 Fragaria vesca HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
FAN07G1997 Fragaria x ananassa HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
FAN12G1847 Fragaria x ananassa HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
FAN22G1438 Fragaria x ananassa HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
HanXRQChr02g0058391 Helianthus annuus HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
Lsat_1_v5_gn_1_71720 Lactuca sativa HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
Lj6C348G1 Lonicera japonica HOM05D001159 ORTHO05D001712 3.5e-07 58.5 78 48.7
Nn1g02021 Nelumbo nucifera HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
Nn5g28437 Nelumbo nucifera HOM05D001159 ORTHO05D001712 3.5e-07 58.5 50 66.0
RcHm_v2.0_Chr4g0412361 Rosa chinensis HOM05D001159 ORTHO05D001712 3.5e-07 58.5 43 69.8
Hund03809 Selenicereus undatus HOM05D001159 ORTHO05D001712 3.5e-07 58.5 45 64.4
TAR636G3269 Trochodendron aralioides HOM05D001159 ORTHO05D001712 3.5e-07 58.5 50 64.0
TAR636G3320 Trochodendron aralioides HOM05D001159 ORTHO05D001712 3.5e-07 58.5 50 64.0
arahy.Tifrunner.gnm1.ann1.HUX1YA Arachis hypogaea HOM05D001159 ORTHO05D001712 4.6e-07 58.2 78 48.7
Cfa008666 Carpinus fangiana HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 66.0
COL.COLO4_35961 Corchorus olitorius HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 66.0
Haze_11685 Corylus avellana HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 66.0
CsaV3_3G015830 Cucumis sativus L. HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 66.0
Duzib212G0394 Durio zibethinus HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 66.0
MD04G1022100 Malus domestica HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 66.0
Sed0014371 Sechium edule HOM05D001159 ORTHO05D001712 4.6e-07 58.2 50 68.0
GSVIVG01031567001 Vitis vinifera HOM05D001159 ORTHO05D001712 4.6e-07 58.2 55 58.2
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 6.0e-07 57.8 43 69.8
ATR0684G097 Amborella trichopoda HOM05D001159 ORTHO05D001712 6.0e-07 57.8 43 67.4
Aqoxy3G02069 Aquilegia oxysepala HOM05D001159 ORTHO05D001712 6.0e-07 57.8 43 69.8
arahy.Tifrunner.gnm1.ann1.SHN3V5 Arachis hypogaea HOM05D001159 ORTHO05D001712 6.0e-07 57.8 50 68.0
Manes.03G060432 Manihot esculenta HOM05D001159 ORTHO05D011383 6.0e-07 57.8 50 66.0
TAR374G0616 Trochodendron aralioides HOM05D001159 ORTHO05D001712 6.0e-07 57.8 43 69.8
vmacro15593 Vaccinium macrocarpon HOM05D001159 ORTHO05D001712 6.0e-07 57.8 50 66.0
AUR62006285 Chenopodium quinoa HOM05D001159 ORTHO05D001712 7.9e-07 57.4 50 62.0
AUR62026334 Chenopodium quinoa HOM05D001159 ORTHO05D001712 7.9e-07 57.4 50 62.0
Gohir.D09G201500 Gossypium hirsutum HOM05D001159 ORTHO05D001712 7.9e-07 57.4 50 66.0
HanXRQChr01g0022011 Helianthus annuus HOM05D001159 ORTHO05D001712 7.9e-07 57.4 43 67.4
EL10Ac7g16801 Beta vulgaris HOM05D001159 ORTHO05D001712 1.0e-06 57.0 50 62.0
BcaB02g10435 Brassica carinata HOM05D001159 ORTHO05D001712 1.0e-06 57.0 50 60.0
CiPaw.01G113300 Carya illinoinensis HOM05D001159 ORTHO05D001712 1.0e-06 57.0 50 64.0
CDE02G1371 Ceratophyllum demersum HOM05D001159 ORTHO05D001712 1.0e-06 57.0 50 66.0
Gohir.A03G095000 Gossypium hirsutum HOM05D001159 ORTHO05D001712 1.0e-06 57.0 43 72.1
Prupe.1G172100 Prunus persica HOM05D001159 ORTHO05D001712 1.0e-06 57.0 50 64.0
Nn1g08959 Nelumbo nucifera HOM05D001159 ORTHO05D001712 1.3e-06 56.6 50 60.0
C04p17650 Brassica napus HOM05D001159 ORTHO05D042522 1.8e-06 56.2 50 60.0
BolC4t23311H Brassica oleracea HOM05D001159 ORTHO05D042522 1.8e-06 56.2 50 60.0
PGSC0003DMG400015743 Solanum tuberosum HOM05D001159 ORTHO05D001712 1.8e-06 56.2 78 44.9
Ah.15g090440 Amaranthus hybridus HOM05D001159 ORTHO05D001712 2.3e-06 55.8 50 64.0
CDE02G3085 Ceratophyllum demersum HOM05D001159 ORTHO05D001712 2.3e-06 55.8 43 62.8
Lj6g0004476 Lotus japonicus HOM05D001159 ORTHO05D001712 2.3e-06 55.8 50 62.0
Manes.01G002500 Manihot esculenta HOM05D001159 ORTHO05D001712 2.3e-06 55.8 43 69.8
Zm00001eb100920 Zea mays HOM05D001159 ORTHO05D001712 2.3e-06 55.8 43 65.1
Aqoxy2G04075 Aquilegia oxysepala HOM05D001159 ORTHO05D001712 3.0e-06 55.5 43 67.4
CiPaw.02G062300 Carya illinoinensis HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 64.0
CDE09G0783 Ceratophyllum demersum HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 64.0
Cc03_g09120 Coffea canephora HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 62.0
Migut.G00966 Erythranthe guttata HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 62.0
Gohir.D10G135900 Gossypium hirsutum HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 66.0
Manes.01G055708 Manihot esculenta HOM05D001159 ORTHO05D011383 3.0e-06 55.5 50 64.0
Nn3g19270 Nelumbo nucifera HOM05D001159 ORTHO05D001712 3.0e-06 55.5 43 67.4
QL06p027344 Quercus lobata HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 62.0
SHI10891 Sapria himalayana HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 66.0
Sed0001887 Sechium edule HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 64.0
SGA_v2.0_scaffold19G08794 Striga asiatica HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 60.0
SGA_v2.0_scaffold299G47718 Striga asiatica HOM05D001159 ORTHO05D001712 3.0e-06 55.5 50 60.0
Dinv43537 Davidia involucrata HOM05D001159 ORTHO05D001712 3.9e-06 55.1 43 62.8
ECA233G5196 Erigeron canadensis HOM05D001159 ORTHO05D001712 3.9e-06 55.1 78 43.6
Lsat_1_v5_gn_6_58860 Lactuca sativa HOM05D001159 ORTHO05D001712 3.9e-06 55.1 43 65.1
MD14G1124000 Malus domestica HOM05D001159 ORTHO05D001712 3.9e-06 55.1 50 64.0
Nitab4.5_0002260g0290 Nicotiana tabacum HOM05D001159 ORTHO05D001712 3.9e-06 55.1 50 60.0
Nitab4.5_0003358g0020 Nicotiana tabacum HOM05D001159 ORTHO05D001712 3.9e-06 55.1 50 60.0
SEGI_41200 Sequoiadendron giganteum HOM05D001159 ORTHO05D001712 3.9e-06 55.1 50 64.0
TWI26G0003 Tripterygium wilfordii HOM05D001159 ORTHO05D001712 3.9e-06 55.1 50 64.0
TWI73G0210 Tripterygium wilfordii HOM05D001159 ORTHO05D001712 3.9e-06 55.1 50 64.0
TAR375G0641 Trochodendron aralioides HOM05D001159 ORTHO05D001712 3.9e-06 55.1 43 65.1
unitig_0.g2394 Utricularia gibba HOM05D001159 ORTHO05D001712 3.9e-06 55.1 66 51.5
Dinv43983 Davidia involucrata HOM05D001159 ORTHO05D001712 5.1e-06 54.7 43 62.8
Gohir.A10G130500 Gossypium hirsutum HOM05D001159 ORTHO05D001712 5.1e-06 54.7 50 64.0
Gorai.011G150700 Gossypium raimondii HOM05D001159 ORTHO05D001712 5.1e-06 54.7 50 64.0
Oeu034312.1 Olea europaea HOM05D001159 ORTHO05D001712 5.1e-06 54.7 50 60.0
Phvul.003G066300 Phaseolus vulgaris HOM05D001159 ORTHO05D001712 5.1e-06 54.7 50 64.0
Solyc05g053830.3 Solanum lycopersicum HOM05D001159 ORTHO05D001712 5.1e-06 54.7 43 62.8
Sopen05g032300 Solanum pennellii HOM05D001159 ORTHO05D001712 5.1e-06 54.7 43 62.8
TWI09G1260 Tripterygium wilfordii HOM05D001159 ORTHO05D001712 5.1e-06 54.7 50 64.0
unitig_37.g12024 Utricularia gibba HOM05D001159 ORTHO05D001712 5.1e-06 54.7 66 50.0
CANSAT78G0542 Cannabis sativa HOM05D001159 ORTHO05D001712 6.7e-06 54.3 50 62.0
Os09g0460200 Oryza sativa ssp. japonica HOM05D001159 ORTHO05D001712 6.7e-06 54.3 43 62.8
MSTRG.4264 Avicennia marina HOM05D001159 ORTHO05D001712 8.7e-06 53.9 78 42.3
BcaC07g36824 Brassica carinata HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 62.8
A08p36420 Brassica napus HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 62.8
C08p01930 Brassica napus HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 62.8
BolC8t46990H Brassica oleracea HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 62.8
BraA08t35545Z Brassica rapa HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 62.8
Gohir.A13G009000 Gossypium hirsutum HOM05D001159 ORTHO05D001712 8.7e-06 53.9 51 56.9
PSO063G1786 Papaver somniferum HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 65.1
PSO782G5443 Papaver somniferum HOM05D001159 ORTHO05D001712 8.7e-06 53.9 43 65.1
Peaxi162Scf00423g00610 Petunia axillaris HOM05D001159 ORTHO05D001712 8.7e-06 53.9 78 42.3
Prupe.2G107900 Prunus persica HOM05D001159 ORTHO05D001712 8.7e-06 53.9 51 60.8
VMungo1383G3609 Vigna mungo HOM05D001159 ORTHO05D001712 8.7e-06 53.9 50 62.0


User provided reference genes

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