Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 2.4e-38 161.8 88 100.0
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 9.0e-25 116.7 88 77.3
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.8e-18 94.4 90 66.7
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.1e-17 91.7 88 65.9
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 2.0e-16 89.0 90 66.7
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.4e-16 88.2 88 63.6
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-16 88.2 90 65.6
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-15 86.7 90 64.4
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 2.2e-15 85.5 89 62.9
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 5.0e-15 84.3 95 54.7
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.0e-15 84.3 87 60.9
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 2.5e-14 82.0 79 68.4
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 3.2e-14 81.6 88 59.1
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 4.2e-14 81.3 88 62.5
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 9.4e-14 80.1 58 75.9
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.6e-13 79.3 78 64.1
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.6e-13 79.3 75 66.7
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.6e-13 79.3 75 66.7
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 2.7e-13 78.6 90 60.0
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 2.7e-13 78.6 90 60.0
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 2.7e-13 78.6 83 62.7
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 3.6e-13 78.2 77 64.9
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.6e-13 77.8 74 59.5
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 4.6e-13 77.8 78 65.4
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 6.1e-13 77.4 77 63.6
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.1e-13 77.4 88 58.0
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 7.9e-13 77.0 73 60.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 7.9e-13 77.0 59 72.9
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.4e-12 76.3 88 59.1
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.8e-12 75.9 80 62.5
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 3.0e-12 75.1 88 58.0
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 5.1e-12 74.3 80 61.2
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 5.1e-12 74.3 88 56.8
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 8.8e-12 73.6 82 62.2
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 8.8e-12 73.6 79 63.3
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 8.8e-12 73.6 78 60.3
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.1e-11 73.2 78 61.5
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.1e-11 73.2 82 48.8
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.5e-11 72.8 88 59.1
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 2.0e-11 72.4 59 71.2
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 2.0e-11 72.4 88 55.7
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.5e-11 72.0 88 59.1
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 3.3e-11 71.6 77 61.0
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 4.3e-11 71.2 91 59.3
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 9.7e-11 70.1 76 59.2
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 9.7e-11 70.1 59 72.9
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 9.7e-11 70.1 59 72.9
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 9.7e-11 70.1 59 72.9
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.3e-10 69.7 90 57.8
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.7e-10 69.3 88 55.7
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.8e-10 68.6 77 54.5
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.8e-10 67.8 91 50.5
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 4.8e-10 67.8 68 63.2
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 6.3e-10 67.4 81 59.3
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.1e-09 66.6 84 59.5
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.1e-09 66.6 59 71.2
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 1.1e-09 66.6 83 56.6
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.4e-09 66.2 89 48.3
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.4e-09 66.2 89 48.3
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.8e-09 65.9 89 53.9
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.8e-09 65.9 89 51.7
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-09 65.5 84 58.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 2.4e-09 65.5 86 45.3
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.4e-09 65.5 81 55.6
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.4e-09 65.5 83 57.8
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.1e-09 65.1 60 66.7
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 4.1e-09 64.7 89 56.2
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.1e-09 64.7 85 55.3
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 4.1e-09 64.7 62 64.5
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 4.1e-09 64.7 86 57.0
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 4.1e-09 64.7 86 57.0
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.1e-09 64.7 88 47.7
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 5.3e-09 64.3 71 57.7
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 5.3e-09 64.3 71 57.7
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.3e-09 64.3 88 51.1
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.3e-09 64.3 71 56.3
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 6.9e-09 63.9 89 55.1
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 6.9e-09 63.9 88 51.1
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 6.9e-09 63.9 89 52.8
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 9.1e-09 63.5 90 53.3
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-08 63.2 89 52.8
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 1.2e-08 63.2 88 53.4
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-08 63.2 88 51.1
CiPaw.09G078200 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.5e-08 62.8 58 67.2
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-08 62.8 88 50.0
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-08 62.8 88 51.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-08 62.4 89 47.2
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 2.0e-08 62.4 60 61.7
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 2.0e-08 62.4 90 52.2
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-08 62.4 88 50.0
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 3.4e-08 61.6 89 51.7
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.5e-08 61.2 93 54.8
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 4.5e-08 61.2 93 54.8
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 5.9e-08 60.8 89 46.1
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 5.9e-08 60.8 91 52.7
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 5.9e-08 60.8 80 56.2
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 5.9e-08 60.8 83 57.8
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 5.9e-08 60.8 90 45.6
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.9e-08 60.8 84 47.6
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 7.7e-08 60.5 58 62.1
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 7.7e-08 60.5 58 62.1
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 7.7e-08 60.5 89 47.2
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 7.7e-08 60.5 60 61.7
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 7.7e-08 60.5 89 47.2
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 7.7e-08 60.5 60 61.7
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 7.7e-08 60.5 89 47.2
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 7.7e-08 60.5 83 54.2
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.7e-08 60.5 57 56.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 7.7e-08 60.5 89 47.2
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 7.7e-08 60.5 80 56.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 7.7e-08 60.5 98 44.9
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 7.7e-08 60.5 94 52.1
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.0e-07 60.1 96 43.8
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.0e-07 60.1 89 49.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.0e-07 60.1 89 49.4
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.0e-07 60.1 88 46.6
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.0e-07 60.1 90 53.3
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.3e-07 59.7 88 45.5
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.3e-07 59.7 89 51.7
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.3e-07 59.7 58 67.2
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.3e-07 59.7 89 57.3
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.7e-07 59.3 89 44.9
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.7e-07 59.3 90 46.7
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.2e-07 58.9 60 66.7
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.2e-07 58.9 52 65.4
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.2e-07 58.9 88 46.6
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 2.2e-07 58.9 89 56.2
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 2.9e-07 58.5 89 46.1
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 2.9e-07 58.5 89 46.1
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.9e-07 58.5 91 49.5
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.9e-07 58.5 88 50.0
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.9e-07 58.5 89 44.9
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.9e-07 58.5 88 40.9
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 2.9e-07 58.5 55 67.3
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 2.9e-07 58.5 81 56.8
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 3.8e-07 58.2 90 45.6
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.8e-07 58.2 59 62.7
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 3.8e-07 58.2 78 53.8
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 5.0e-07 57.8 89 44.9
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 5.0e-07 57.8 89 57.3
Os07g0567900 Oryza sativa ssp. japonica HOM05D002385 ORTHO05D002245 5.0e-07 57.8 83 55.4
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 6.5e-07 57.4 91 44.0
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.5e-07 57.4 43 69.8
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 8.5e-07 57.0 89 43.8
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 8.5e-07 57.0 58 60.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.5e-07 57.0 80 56.2
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.5e-07 57.0 80 56.2
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 8.5e-07 57.0 79 51.9
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 8.5e-07 57.0 60 63.3
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 8.5e-07 57.0 108 46.3
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.5e-07 57.0 74 51.4
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.1e-06 56.6 80 56.2
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.1e-06 56.6 89 49.4
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.9e-06 55.8 88 52.3
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.9e-06 55.8 80 55.0
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.9e-06 55.8 80 56.2
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.9e-06 55.8 80 52.5
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-06 55.8 78 57.7
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 2.5e-06 55.5 73 53.4
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 3.2e-06 55.1 69 47.8
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 4.2e-06 54.7 59 49.2
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 4.2e-06 54.7 59 49.2
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 4.2e-06 54.7 93 46.2
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 4.2e-06 54.7 88 48.9
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 5.5e-06 54.3 87 41.4
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 5.5e-06 54.3 89 42.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 5.5e-06 54.3 80 55.0
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.2e-06 53.9 58 56.9
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 7.2e-06 53.9 52 63.5
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 9.4e-06 53.5 78 53.8
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 9.4e-06 53.5 82 56.1


User provided reference genes

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