Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 9.3e-265 916.4 484 100.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.7e-181 639.8 536 66.8
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 2.9e-173 612.5 533 64.9
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.4e-172 609.4 541 64.7
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 6.6e-170 601.3 542 64.2
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 4.3e-161 572.0 534 63.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 9.6e-161 570.9 538 61.7
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.7e-160 568.9 577 58.8
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 3.1e-159 565.8 547 60.9
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 3.1e-159 565.8 586 56.8
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.9e-157 558.5 538 61.0
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 7.9e-155 551.2 535 59.6
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 8.7e-154 547.7 540 60.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.2e-149 533.1 539 61.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.5e-147 525.8 533 59.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 6.0e-147 525.0 534 59.4
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.5e-145 519.6 536 59.7
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.4e-143 513.1 526 61.6
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 6.9e-143 511.5 555 56.0
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-140 504.2 581 54.2
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-140 503.1 539 55.3
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 6.1e-139 498.4 543 55.8
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.8e-138 496.9 569 54.8
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.1e-138 495.4 538 56.5
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 6.7e-138 495.0 533 56.8
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.1e-137 494.2 450 63.1
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.5e-137 493.8 541 55.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.2e-136 490.0 539 56.4
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.2e-136 490.0 547 56.7
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 6.3e-136 488.4 530 56.4
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 6.9e-135 485.0 507 58.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.0e-134 483.4 532 56.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 6.5e-133 478.4 570 53.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 8.5e-133 478.0 532 55.5
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.9e-132 476.9 536 54.9
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 2.7e-131 473.0 590 51.9
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.1e-131 471.9 527 55.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 7.9e-131 471.5 536 54.5
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.4e-130 470.7 520 56.3
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.0e-129 466.8 546 54.4
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 3.3e-129 466.1 520 56.5
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.1e-127 461.1 543 53.2
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.4e-127 460.7 537 53.8
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 2.0e-126 456.8 549 53.6
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.6e-126 456.4 550 53.1
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.7e-125 453.8 534 54.9
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.9e-125 453.0 495 57.6
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.8e-125 452.6 531 53.5
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 8.5e-125 451.4 578 50.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.1e-124 451.1 534 54.9
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.4e-124 450.7 466 58.2
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.9e-124 450.3 545 52.5
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 9.4e-124 448.0 537 52.7
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 9.4e-124 448.0 523 54.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.2e-123 447.6 530 52.8
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.4e-122 444.1 546 52.6
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 2.3e-122 443.4 570 50.2
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.0e-122 443.0 567 51.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 5.2e-122 442.2 540 53.5
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 6.7e-122 441.8 552 50.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 6.7e-122 441.8 531 53.3
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 7.4e-121 438.3 536 51.9
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.8e-119 433.7 530 52.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 9.1e-119 431.4 531 51.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 3.5e-118 429.5 521 52.2
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 5.9e-118 428.7 538 52.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.0e-117 427.9 544 51.5
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.3e-117 427.6 543 52.7
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 8.5e-117 424.9 530 51.9
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.1e-116 424.5 545 51.2
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.5e-116 424.1 315 70.8
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 9.4e-116 421.4 535 50.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.6e-115 419.5 529 52.4
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 6.1e-115 418.7 533 51.4
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.8e-114 417.2 530 49.2
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 5.2e-114 415.6 633 46.1
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.2e-113 414.5 530 48.7
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 4.4e-113 412.5 522 50.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 5.7e-113 412.1 536 50.6
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 9.1e-111 404.8 530 50.0
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 5.2e-106 389.0 463 52.5
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 2.6e-105 386.7 557 47.9
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.3e-104 381.7 439 53.5
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.1e-99 367.1 529 46.5
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 6.1e-99 365.5 526 48.3
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 9.8e-97 358.2 523 46.7
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 1.8e-95 354.0 310 63.2
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.5e-94 349.4 520 45.8
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 5.9e-94 349.0 511 46.8
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 2.3e-93 347.1 515 45.2
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.9e-93 346.7 296 64.2
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 6.8e-90 335.5 521 45.5
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 9.8e-89 331.6 517 45.3
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 9.8e-89 331.6 517 45.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.9e-88 329.3 520 45.8
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.4e-87 327.0 577 43.5
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.4e-87 327.0 550 40.5
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.2e-86 324.7 516 44.4
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.0e-85 321.6 520 42.5
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 2.5e-84 317.0 453 46.1
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.3e-84 316.6 523 44.0
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.6e-84 315.8 480 45.8
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.6e-83 314.3 535 42.4
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.8e-82 310.8 536 44.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 7.5e-81 305.4 297 59.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-76 291.6 455 47.0
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 4.3e-76 289.7 376 51.1
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 9.5e-76 288.5 456 47.1
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.4e-74 284.6 525 41.5
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.7e-72 277.7 481 43.0
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.7e-72 277.7 481 43.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.6e-67 261.2 560 37.5
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 2.8e-67 260.4 296 50.0
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.9e-60 237.7 401 43.1
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.1e-52 211.8 468 37.6
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.6e-52 208.8 412 41.5
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 3.0e-45 187.2 567 32.8
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.3e-43 181.8 485 34.0
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.5e-41 174.9 565 30.1
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.7e-40 171.4 179 61.5
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 2.8e-35 154.1 247 41.7
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.9e-31 141.4 207 39.6
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-23 115.5 144 51.4
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.2e-22 112.1 250 39.6
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.9e-21 107.1 100 59.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 6.3e-19 99.8 215 37.7
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 6.9e-18 96.3 63 68.3
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.7e-16 91.7 170 31.8
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.1e-14 84.7 196 37.2
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.4e-13 82.0 196 37.2
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.7e-11 75.1 207 33.3
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 3.7e-11 73.9 260 28.8
Hma1.2p1_0081F.1_g042300 Hydrangea macrophylla HOM05D002452 ORTHO05D006766 1.2e-09 68.9 48 72.9
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 5.9e-09 66.6 196 35.2
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 7.2e-07 59.7 37 73.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 9.4e-07 59.3 119 39.5
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 6.1e-06 56.6 168 35.7


User provided reference genes

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