Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.3e-221 772.7 389 100.0
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 9.1e-154 547.4 384 74.7
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 2.3e-152 542.7 392 73.5
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 2.9e-152 542.3 365 76.2
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 3.0e-149 532.3 390 72.3
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 9.8e-148 527.3 369 74.3
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.2e-147 526.2 388 73.5
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 2.8e-147 525.8 391 71.9
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.8e-147 525.8 379 71.2
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.8e-147 525.8 363 76.6
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 4.9e-147 525.0 381 71.7
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.3e-147 524.6 376 75.3
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 1.1e-146 523.9 370 71.9
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.4e-146 522.7 389 71.5
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 3.2e-146 522.3 372 75.3
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 3.2e-146 522.3 372 73.1
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 4.1e-146 521.9 373 73.2
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 7.0e-146 521.2 367 73.8
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.0e-145 519.6 370 71.1
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 2.7e-145 519.2 373 72.4
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 3.5e-145 518.8 385 71.2
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 7.8e-145 517.7 370 70.8
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.0e-144 517.3 370 70.8
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 5.0e-144 515.0 372 72.0
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.5e-143 512.7 372 72.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 5.6e-143 511.5 360 73.9
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 7.3e-143 511.1 371 71.7
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 9.5e-143 510.8 376 70.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 6.1e-142 508.1 372 72.3
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.0e-141 507.3 369 70.2
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.0e-141 507.3 364 73.1
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.8e-141 506.5 374 70.3
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.8e-141 506.5 394 68.8
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.3e-141 506.1 371 71.4
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 5.2e-141 505.0 369 70.7
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 8.9e-141 504.2 372 71.5
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-140 503.8 366 70.8
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 2.0e-140 503.1 370 70.0
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.0e-140 503.1 378 71.2
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.4e-140 502.3 377 70.6
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 3.4e-140 502.3 367 70.8
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.4e-140 501.9 363 71.6
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 9.8e-140 500.7 377 69.0
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 9.8e-140 500.7 365 73.2
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.3e-139 500.4 371 72.0
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.7e-139 500.0 367 71.4
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.4e-138 496.9 401 67.8
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 9.2e-138 494.2 342 74.3
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.2e-137 493.8 368 68.5
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.0e-137 493.0 343 73.8
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.5e-137 492.3 359 72.1
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.0e-137 491.5 390 67.9
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 6.6e-136 488.0 394 68.0
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.5e-135 486.9 374 68.4
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.6e-134 483.4 380 67.6
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.7e-134 481.9 364 68.7
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 6.8e-133 478.0 372 68.3
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 6.8e-133 478.0 373 67.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.4e-132 475.7 356 69.4
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 7.5e-132 474.6 415 63.1
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 7.5e-132 474.6 415 63.1
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 9.8e-132 474.2 372 67.5
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.7e-131 473.4 372 67.5
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 2.9e-131 472.6 379 65.7
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.9e-131 471.9 372 67.2
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 6.4e-131 471.5 355 69.6
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 4.1e-130 468.8 358 68.4
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 7.1e-130 468.0 362 68.2
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.6e-129 466.8 373 67.6
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 5.1e-128 461.8 375 64.8
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.5e-127 460.3 338 72.2
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 4.3e-127 458.8 360 66.7
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 5.6e-127 458.4 384 65.4
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.3e-127 458.0 353 67.4
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.1e-125 454.1 379 66.8
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.8e-125 453.4 387 64.9
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 4.0e-125 452.2 359 67.7
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.5e-124 450.3 355 66.8
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 5.8e-124 448.4 357 66.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.2e-123 446.4 381 62.5
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.1e-122 444.1 362 65.2
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 2.4e-122 443.0 378 62.4
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.2e-121 440.7 339 69.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.1e-121 439.9 336 68.2
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.3e-120 437.2 375 63.5
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.7e-113 412.9 327 66.1
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.6e-110 402.5 329 63.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 7.6e-108 394.8 322 64.9
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 6.2e-102 375.2 356 56.7
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.8e-101 373.6 361 56.5
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 3.1e-101 372.9 322 63.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 9.0e-101 371.3 231 79.2
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.2e-99 366.7 288 66.7
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.1e-98 364.4 228 76.8
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.9e-98 363.6 324 62.3
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 4.2e-98 362.5 298 64.4
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.7e-96 354.8 337 61.1
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.1e-95 354.4 299 63.2
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 5.6e-95 352.1 349 52.7
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.1e-90 337.8 258 69.8
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.2e-90 336.3 382 48.4
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.8e-88 330.5 379 52.8
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.8e-86 323.2 255 67.5
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.7e-86 322.8 196 82.7
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.7e-83 313.9 367 52.0
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.2e-81 307.8 369 50.9
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 9.7e-79 298.1 253 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 4.6e-73 279.3 218 64.7
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.4e-72 277.7 401 42.6
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.5e-68 264.2 148 85.8
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.6e-65 254.2 160 79.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 3.0e-56 223.4 120 88.3
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.7e-51 207.6 342 38.9
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.1e-50 204.9 198 59.1
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 2.7e-49 200.3 183 60.1
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.0e-48 198.4 300 44.3
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.8e-48 197.6 134 71.6
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.2e-47 194.9 121 76.0
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 4.4e-47 193.0 147 63.9
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.2e-46 190.7 172 64.0
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 5.9e-44 182.6 162 64.8
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.4e-39 166.8 372 32.0
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 6.3e-38 162.5 178 53.9
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 6.3e-38 162.5 178 53.9
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 5.9e-36 156.0 91 87.9
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 6.6e-35 152.5 174 51.7
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-32 144.4 204 49.0
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.2e-28 131.7 84 75.0
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 5.2e-24 116.3 116 56.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 5.8e-23 112.8 96 62.5
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 6.4e-22 109.4 65 81.5
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 2.4e-21 107.5 152 44.1
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 2.0e-20 104.4 71 77.5
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 6.0e-20 102.8 83 68.7
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 5.8e-15 86.3 81 55.6
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 9.8e-15 85.5 55 76.4
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 6.4e-14 82.8 57 70.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 1.6e-12 78.2 54 70.4
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.6e-09 68.2 96 41.7
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 4.0e-08 63.5 40 75.0
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 1.5e-07 61.6 34 85.3
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 3.4e-07 60.5 36 80.6
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 7.6e-07 59.3 42 66.7


User provided reference genes

Program Settings