Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.5e-203 712.6 353 100.0
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 5.4e-161 571.2 409 73.3
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 3.0e-156 555.4 415 69.6
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.2e-156 554.7 409 70.2
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.9e-154 548.9 408 69.1
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 3.5e-152 542.0 409 68.5
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 2.1e-149 532.7 413 67.6
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.8e-149 532.3 406 68.2
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.2e-149 531.2 414 67.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 7.5e-147 524.2 410 67.3
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 9.8e-147 523.9 410 66.6
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.3e-146 523.5 448 62.3
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 2.9e-146 522.3 412 65.0
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.9e-146 522.3 413 65.1
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 6.4e-146 521.2 409 66.5
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 8.3e-146 520.8 409 65.8
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.4e-145 520.0 409 66.5
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.9e-145 519.6 409 66.3
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 7.0e-145 517.7 409 65.3
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.2e-144 516.9 410 66.1
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.2e-144 516.9 409 65.0
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 2.0e-144 516.2 409 65.8
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 2.7e-144 515.8 454 60.8
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 2.7e-144 515.8 410 66.1
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 6.0e-144 514.6 409 65.3
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.0e-143 513.8 409 63.8
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.3e-143 512.7 409 65.0
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 3.0e-143 512.3 409 65.8
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 3.9e-143 511.9 409 63.8
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 3.9e-143 511.9 412 63.8
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 5.0e-143 511.5 405 65.2
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 5.0e-143 511.5 405 65.2
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 6.6e-143 511.1 408 63.7
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 8.6e-143 510.8 409 65.3
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.5e-142 510.0 415 65.5
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.5e-142 510.0 409 65.0
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 5.6e-142 508.1 412 64.1
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.2e-141 506.9 412 63.8
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 1.2e-141 506.9 412 65.5
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.2e-141 506.9 409 65.0
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 3.6e-141 505.4 410 64.1
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 4.7e-141 505.0 411 64.0
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.4e-140 503.4 418 64.1
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.4e-140 503.4 409 64.5
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 5.2e-140 501.5 410 63.9
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.5e-139 500.0 402 63.2
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.6e-139 499.2 428 62.6
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 3.4e-139 498.8 403 64.5
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 3.4e-139 498.8 404 64.9
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 4.4e-139 498.4 409 62.8
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 5.8e-139 498.0 413 63.9
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.4e-137 493.4 401 63.6
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 2.4e-137 492.7 412 62.9
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 3.2e-137 492.3 412 63.1
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 9.2e-137 490.7 436 61.5
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.2e-136 490.3 458 59.2
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 1.6e-136 490.0 409 62.6
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.6e-136 490.0 391 66.2
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 2.1e-136 489.6 391 65.2
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 2.7e-136 489.2 407 65.1
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 2.7e-136 489.2 409 62.1
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 3.5e-136 488.8 412 62.9
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 6.0e-136 488.0 409 62.8
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 6.0e-136 488.0 404 63.6
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 2.3e-135 486.1 409 62.6
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.3e-135 486.1 429 60.8
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 3.0e-135 485.7 415 61.7
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 8.6e-135 484.2 404 63.9
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 2.5e-134 482.6 404 63.6
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 5.6e-134 481.5 407 63.1
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.2e-133 480.3 409 61.4
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.2e-133 480.3 409 61.4
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 2.1e-133 479.6 409 61.4
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.8e-133 479.2 371 68.5
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 2.8e-133 479.2 412 60.4
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 2.8e-133 479.2 412 62.6
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 3.6e-133 478.8 432 58.3
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 8.1e-133 477.6 409 61.4
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 8.1e-133 477.6 408 60.5
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.1e-132 477.2 406 61.8
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.4e-132 476.9 411 60.1
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 3.1e-132 475.7 411 60.1
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 5.2e-132 474.9 411 60.1
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 6.8e-132 474.6 412 60.2
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.6e-131 472.6 410 60.7
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.9e-130 469.2 406 60.6
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 6.4e-130 468.0 411 59.4
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 6.4e-130 468.0 411 59.4
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 1.1e-129 467.2 410 62.0
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.9e-129 466.5 405 60.0
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.9e-129 466.5 412 59.2
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 2.4e-129 466.1 412 59.5
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 1.6e-128 463.4 387 63.0
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 3.5e-128 462.2 398 60.6
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 4.6e-128 461.8 414 59.9
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 8.6e-127 457.6 429 56.2
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.1e-126 457.2 412 59.7
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.6e-125 453.4 397 63.0
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 3.6e-125 452.2 404 58.4
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 6.2e-125 451.4 438 57.1
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.1e-124 450.7 389 61.4
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 5.8e-123 444.9 429 56.4
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 6.4e-122 441.4 437 55.4
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 6.4e-122 441.4 494 51.2
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.4e-121 440.3 389 60.7
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.9e-121 439.9 391 61.6
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 9.3e-121 437.6 405 56.8
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 6.6e-119 431.4 381 62.5
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 8.7e-119 431.0 365 62.7
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.5e-118 430.3 407 55.3
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 5.6e-118 428.3 399 57.6
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 2.6e-115 419.5 350 61.7
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 2.6e-115 419.5 406 56.7
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 9.3e-113 411.0 288 70.8
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 2.7e-112 409.5 350 62.0
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.6e-112 408.7 358 59.5
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.8e-111 406.8 411 54.5
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.1e-110 404.1 370 57.6
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 2.5e-102 376.3 418 50.0
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 6.2e-101 371.7 421 48.5
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.2e-98 363.2 400 49.0
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 6.3e-93 345.1 395 48.9
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.4e-92 344.0 340 54.1
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 5.1e-87 325.5 364 53.3
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 6.3e-85 318.5 383 47.8
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 2.4e-84 316.6 255 63.9
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.2e-83 314.3 403 48.9
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 5.9e-83 312.0 276 60.1
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 7.7e-83 311.6 360 51.1
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 3.2e-81 306.2 415 43.4
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 7.4e-78 295.0 255 62.0
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 1.5e-75 287.3 410 41.2
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.6e-75 286.6 360 48.6
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.2e-72 277.7 412 41.7
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 2.6e-70 270.0 209 66.5
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 2.8e-69 266.5 443 37.9
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.3e-66 257.7 212 62.3
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 4.7e-64 249.2 226 59.7
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-63 247.3 209 61.7
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.0e-51 207.2 175 60.0
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 3.5e-51 206.5 409 34.5
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 6.5e-50 202.2 424 35.4
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.5e-49 201.1 158 62.0
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 7.2e-49 198.7 132 75.0
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 1.0e-47 194.9 116 77.6
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-46 191.4 177 61.6
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.7e-43 180.3 315 40.6
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.0e-42 178.3 181 54.7
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.1e-40 170.6 183 53.6
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.7e-35 153.7 199 46.7
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.3e-34 151.4 261 36.8
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 8.6e-34 148.7 88 81.8
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 3.4e-30 136.7 85 76.5
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.2e-22 111.7 226 35.4
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 4.1e-20 103.2 73 64.4
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 3.0e-18 97.1 155 38.7
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 3.0e-18 97.1 54 75.9
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 5.1e-18 96.3 66 66.7
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 1.5e-17 94.7 67 65.7
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 5.8e-14 82.8 49 85.7
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 2.9e-13 80.5 58 62.1
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.4e-13 79.3 39 89.7
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.7e-10 71.2 41 70.7
RcHm_v2.0_Chr3g0486691 Rosa chinensis HOM05D004141 ORTHO05D347679 1.4e-07 61.6 38 81.6
Dinv33071 Davidia involucrata HOM05D000783 ORTHO05D000705 3.4e-06 57.0 161 29.2
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 4.4e-06 56.6 88 35.2


User provided reference genes

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