Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18330 Davidia involucrata HOM05D001923 ORTHO05D001903 5.0e-57 224.2 110 100.0
Dinv44813 Davidia involucrata HOM05D001923 ORTHO05D001903 1.8e-51 205.7 105 96.2
Dinv21912 Davidia involucrata HOM05D001923 ORTHO05D001903 2.7e-10 68.9 68 55.9
Dinv13185 Davidia involucrata HOM05D001923 ORTHO05D001903 4.6e-10 68.2 71 54.9
Hma1.2p1_0047F.1_g027870 Hydrangea macrophylla HOM05D001923 ORTHO05D001903 1.3e-09 66.6 62 56.5
EL10Ac6g15098 Beta vulgaris HOM05D001923 ORTHO05D001903 6.6e-09 64.3 52 61.5
SGA_v2.0_scaffold111G31521 Striga asiatica HOM05D001923 ORTHO05D001903 8.7e-09 63.9 51 66.7
CSS0046355 Camellia sinensis var. sinensis HOM05D001923 ORTHO05D001903 2.5e-08 62.4 66 53.0
CDE10G0211 Ceratophyllum demersum HOM05D001923 ORTHO05D001903 2.5e-08 62.4 68 52.9
Ah.02g122470 Amaranthus hybridus HOM05D001923 ORTHO05D001903 3.3e-08 62.0 52 59.6
CSS0007650 Camellia sinensis var. sinensis HOM05D001923 ORTHO05D001903 4.3e-08 61.6 81 46.9
Peaxi162Scf00611g00017 Petunia axillaris HOM05D001923 ORTHO05D001903 4.3e-08 61.6 58 55.2
DCAR_003499 Daucus carota HOM05D001923 ORTHO05D001903 5.6e-08 61.2 49 59.2
arahy.Tifrunner.gnm1.ann1.T2745Z Arachis hypogaea HOM05D001923 ORTHO05D001903 9.6e-08 60.5 71 53.5
arahy.Tifrunner.gnm1.ann1.WC5N1Q Arachis hypogaea HOM05D001923 ORTHO05D001903 9.6e-08 60.5 71 53.5
Psat5g089960 Pisum sativum HOM05D001923 ORTHO05D001903 1.3e-07 60.1 94 39.4
Migut.L00119 Erythranthe guttata HOM05D001923 ORTHO05D001903 1.6e-07 59.7 58 56.9
HPP92_016349 Vanilla planifolia HOM05D001923 ORTHO05D001903 1.6e-07 59.7 58 55.2
MSTRG.3781 Avicennia marina HOM05D001923 ORTHO05D001903 2.1e-07 59.3 70 51.4
Hund13628 Selenicereus undatus HOM05D001923 ORTHO05D001903 2.1e-07 59.3 48 58.3
MSTRG.2566 Avicennia marina HOM05D001923 ORTHO05D001903 2.8e-07 58.9 59 52.5
Glyma.11G240000 Glycine max HOM05D001923 ORTHO05D001903 2.8e-07 58.9 59 55.9
Glyma.18G017400 Glycine max HOM05D001923 ORTHO05D001903 3.6e-07 58.5 59 55.9
PGSC0003DMG400021797 Solanum tuberosum HOM05D001923 ORTHO05D001903 3.6e-07 58.5 68 47.1
Cc07_g15290 Coffea canephora HOM05D001923 ORTHO05D001903 4.8e-07 58.2 68 47.1
Nitab4.5_0000897g0050 Nicotiana tabacum HOM05D001923 ORTHO05D001903 4.8e-07 58.2 68 48.5
Ca_16527_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 6.2e-07 57.8 59 55.9
Ca_16529_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 6.2e-07 57.8 59 55.9
Solyc04g055160.3 Solanum lycopersicum HOM05D001923 ORTHO05D001903 8.1e-07 57.4 58 53.4
Sopen04g025020 Solanum pennellii HOM05D001923 ORTHO05D001903 8.1e-07 57.4 58 53.4
CDE05G3227 Ceratophyllum demersum HOM05D001923 ORTHO05D001903 1.1e-06 57.0 46 60.9
Peaxi162Scf00212g00715 Petunia axillaris HOM05D001923 ORTHO05D001903 1.1e-06 57.0 58 53.4
VMungo1383G3193 Vigna mungo HOM05D001923 ORTHO05D001903 1.1e-06 57.0 59 54.2
CDE05G2476 Ceratophyllum demersum HOM05D001923 ORTHO05D001903 1.4e-06 56.6 42 61.9
AUR62037336 Chenopodium quinoa HOM05D001923 ORTHO05D001903 1.4e-06 56.6 52 57.7
Medtr3g087250 Medicago truncatula HOM05D001923 ORTHO05D001903 1.4e-06 56.6 59 54.2
Sc19g0004850 Simmondsia chinensis HOM05D001923 ORTHO05D001903 1.4e-06 56.6 58 55.2
AUR62002013 Chenopodium quinoa HOM05D001923 ORTHO05D001903 1.8e-06 56.2 52 59.6
AUR62003789 Chenopodium quinoa HOM05D001923 ORTHO05D001903 1.8e-06 56.2 52 59.6
Nitab4.5_0000004g0350 Nicotiana tabacum HOM05D001923 ORTHO05D001903 1.8e-06 56.2 61 50.8
Nitab4.5_0000104g0080 Nicotiana tabacum HOM05D001923 ORTHO05D001903 1.8e-06 56.2 68 47.1
TAR628G0691 Trochodendron aralioides HOM05D001923 ORTHO05D001903 1.8e-06 56.2 58 55.2
Hma1.2p1_0120F.1_g057330 Hydrangea macrophylla HOM05D001923 ORTHO05D001903 2.4e-06 55.8 89 39.3
Hma1.2p1_0237F.1_g099380 Hydrangea macrophylla HOM05D001923 ORTHO05D001903 3.1e-06 55.5 60 48.3
TPR.G17840 Trifolium pratense HOM05D001923 ORTHO05D001903 3.1e-06 55.5 59 54.2
Aqoxy6G00807 Aquilegia oxysepala HOM05D001923 ORTHO05D001903 4.0e-06 55.1 58 53.4
CiPaw.07G180800 Carya illinoinensis HOM05D001923 ORTHO05D001903 4.0e-06 55.1 53 54.7
Nn1g05336 Nelumbo nucifera HOM05D001923 ORTHO05D001903 4.0e-06 55.1 41 63.4
Phvul.001G252000 Phaseolus vulgaris HOM05D001923 ORTHO05D001903 4.0e-06 55.1 59 52.5
Cfa013627 Carpinus fangiana HOM05D001923 ORTHO05D001903 5.3e-06 54.7 48 58.3
Dinv13024 Davidia involucrata HOM05D001923 ORTHO05D001903 5.3e-06 54.7 74 45.9
Sc03g0002110 Simmondsia chinensis HOM05D001923 ORTHO05D001903 5.3e-06 54.7 48 58.3
PGSC0003DMG400001888 Solanum tuberosum HOM05D001923 ORTHO05D001903 5.3e-06 54.7 58 51.7
vmacro04750 Vaccinium macrocarpon HOM05D001923 ORTHO05D001903 5.3e-06 54.7 51 54.9
ClCG08G011050 Citrullus lanatus HOM05D001923 ORTHO05D001903 6.9e-06 54.3 59 50.8
Oeu001783.2 Olea europaea HOM05D001923 ORTHO05D001903 6.9e-06 54.3 51 60.8
MELO3C011358.2 Cucumis melo HOM05D001923 ORTHO05D001903 9.0e-06 53.9 58 51.7
CsaV3_2G024230 Cucumis sativus L. HOM05D001923 ORTHO05D001903 9.0e-06 53.9 58 51.7
Solyc03g078610.3 Solanum lycopersicum HOM05D001923 ORTHO05D001903 9.0e-06 53.9 69 44.9
vmacro12954 Vaccinium macrocarpon HOM05D001923 ORTHO05D001903 9.0e-06 53.9 58 50.0


User provided reference genes

Program Settings