Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 5.6e-113 411.0 213 100.0
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 4.6e-91 338.2 207 85.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 5.1e-90 334.7 213 82.2
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 6.7e-90 334.3 206 83.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.6e-89 331.3 206 83.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 6.2e-88 327.8 208 82.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 8.1e-88 327.4 207 83.1
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 8.1e-88 327.4 209 79.4
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-87 326.6 197 84.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.8e-87 326.2 208 83.2
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.8e-87 326.2 204 82.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.4e-87 325.9 206 82.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 3.1e-87 325.5 207 82.1
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-86 323.6 199 84.4
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.5e-86 323.2 201 81.1
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 4.5e-86 321.6 206 80.6
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 4.5e-86 321.6 206 83.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.0e-85 320.5 215 79.1
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-85 319.7 213 79.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.7e-85 319.7 206 82.5
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.7e-85 319.7 211 77.3
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.2e-85 319.3 192 84.9
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.9e-85 318.9 207 79.2
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 6.5e-85 317.8 210 78.6
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.1e-84 317.0 206 81.1
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-84 316.6 213 79.3
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-84 316.2 192 84.4
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.5e-84 315.8 214 77.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.5e-84 315.8 210 79.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.5e-84 315.8 206 82.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 3.2e-84 315.5 202 81.2
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.2e-84 315.1 209 78.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.2e-84 315.1 214 78.5
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.2e-84 315.1 213 78.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 5.5e-84 314.7 202 80.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.1e-84 314.3 207 81.2
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.1e-84 314.3 207 81.2
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-83 313.5 215 75.8
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.6e-83 313.2 206 80.6
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-83 312.4 192 83.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.5e-83 312.0 208 79.3
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 3.5e-83 312.0 194 83.5
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.0e-83 311.2 208 77.4
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 7.9e-83 310.8 202 77.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.3e-82 310.1 202 80.2
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.3e-82 310.1 208 78.4
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.3e-82 310.1 210 78.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.8e-82 309.7 229 74.2
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 5.1e-82 308.1 210 76.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 6.7e-82 307.8 206 79.1
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 8.7e-82 307.4 209 78.9
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-81 306.2 212 77.4
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.5e-81 305.8 206 78.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.3e-81 305.4 203 78.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.3e-81 305.4 178 85.4
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 3.3e-81 305.4 202 77.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 9.6e-81 303.9 201 78.6
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.7e-80 302.0 200 78.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-79 300.1 193 80.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.4e-79 300.1 190 80.0
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.4e-79 300.1 206 76.2
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.8e-79 299.7 217 76.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.1e-79 298.9 195 79.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 9.0e-79 297.4 174 83.9
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.2e-78 297.0 202 77.7
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.2e-78 297.0 210 76.2
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.5e-78 296.6 210 77.1
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.6e-78 295.8 203 75.9
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.5e-78 295.0 210 73.8
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.5e-78 295.0 210 75.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.8e-78 294.7 293 58.7
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-77 293.9 210 75.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.3e-77 293.5 207 72.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-77 293.5 203 70.9
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.9e-77 292.4 214 72.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.8e-77 292.0 196 76.5
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 5.0e-77 291.6 207 72.5
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 5.0e-77 291.6 210 73.3
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 6.5e-77 291.2 210 73.3
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 8.4e-77 290.8 207 73.4
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 8.4e-77 290.8 211 73.5
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.1e-76 290.4 228 71.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.4e-76 290.0 210 71.4
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.5e-76 288.1 210 72.4
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.5e-76 288.1 208 71.2
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 7.2e-76 287.7 210 70.5
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.2e-75 287.0 199 75.4
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.7e-75 285.8 210 71.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-74 283.9 210 71.4
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.0e-74 282.3 163 86.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 5.1e-74 281.6 216 70.4
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 5.1e-74 281.6 204 73.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.7e-74 281.2 206 70.9
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 8.7e-74 280.8 156 89.7
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.1e-73 280.4 216 69.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 7.4e-73 277.7 204 74.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.2e-72 276.2 206 67.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.2e-72 276.2 208 66.3
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.7e-72 275.4 210 69.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 4.8e-72 275.0 202 71.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 8.2e-72 274.2 193 77.2
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.4e-71 273.5 210 69.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.4e-71 273.5 206 66.5
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.1e-71 271.9 201 70.6
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-70 270.0 207 68.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.0e-70 269.6 206 66.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.4e-70 268.9 193 75.6
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 5.9e-70 268.1 207 69.6
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 2.2e-69 266.2 197 69.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.8e-69 265.4 209 67.9
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.5e-69 264.6 201 67.2
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.5e-68 262.7 204 69.1
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.5e-68 261.5 214 68.7
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 5.5e-68 261.5 203 68.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.6e-67 260.0 174 73.6
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.1e-67 259.6 193 72.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.7e-67 259.2 163 82.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.6e-67 258.8 165 81.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 3.0e-66 255.8 174 71.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.3e-64 248.1 203 67.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.0e-61 238.4 170 69.4
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.4e-60 236.9 169 72.8
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 9.7e-57 224.2 211 62.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 3.7e-56 222.2 130 86.9
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.5e-54 215.7 124 85.5
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.5e-54 215.3 123 87.0
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 7.7e-54 214.5 192 58.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.8e-50 201.1 149 73.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 8.8e-50 201.1 204 54.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.3e-49 199.1 203 58.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.2e-48 196.4 201 57.7
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.1e-47 194.1 170 57.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.6e-46 190.3 116 79.3
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.9e-45 186.0 150 60.7
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.8e-45 185.7 103 89.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.5e-45 184.5 110 87.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.7e-43 179.5 105 86.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.7e-43 178.7 177 54.2
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 7.5e-41 171.4 98 82.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.0e-37 161.0 178 48.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 149 53.0
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.0e-34 151.0 172 52.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.3e-32 144.1 102 72.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 3.9e-21 105.9 99 60.6
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-19 100.9 216 38.9
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.6e-19 100.5 59 78.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 6.2e-19 98.6 72 63.9
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.0e-18 97.8 55 81.8
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.8e-18 97.1 154 38.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.3e-18 96.7 72 62.5
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.3e-16 90.9 93 49.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 2.0e-14 83.6 156 34.6
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.9e-12 77.0 62 67.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.3e-10 70.1 56 64.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 3.1e-10 69.7 40 85.0
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.5e-09 67.4 38 81.6


User provided reference genes

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