Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-112 409.1 208 100.0
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 92.8
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 5.5e-105 384.4 207 92.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 5.5e-105 384.4 207 92.8
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.3
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 91.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 91.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.8
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 92.3
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 91.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.7
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 91.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.7e-104 382.1 207 91.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 91.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 91.3
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 91.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 90.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 90.9
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 90.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 91.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 91.3
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 91.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 90.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 90.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 90.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 91.7
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 90.4
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 90.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.9
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 91.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 91.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 89.9
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 91.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.9e-102 375.9 206 90.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 90.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.9e-102 375.9 208 90.4
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 89.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 91.3
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 90.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.5e-102 375.6 213 89.7
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.7e-102 374.4 210 90.5
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 89.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 7.4e-102 374.0 208 89.9
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 9.7e-102 373.6 207 89.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.3e-101 373.2 207 89.9
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 90.4
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 89.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 89.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.2e-101 372.5 206 89.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 88.0
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.3e-101 370.9 206 88.8
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 88.9
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 88.9
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 89.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 3.1e-100 368.6 218 85.8
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 4.1e-100 368.2 203 90.1
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 6.9e-100 367.5 207 89.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 6.9e-100 367.5 207 89.4
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.0e-99 365.9 209 88.5
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 209 88.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.6e-99 365.5 209 88.0
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 205 88.3
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 3.4e-99 365.2 209 88.0
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 87.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 5.9e-99 364.4 205 88.3
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 7.7e-99 364.0 196 92.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.0
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 86.5
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.0
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.0
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.0
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.8e-98 361.7 208 87.5
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 6.5e-98 360.9 208 87.0
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 8.5e-98 360.5 208 87.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.4e-97 359.8 208 87.0
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.4e-97 359.8 208 87.0
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 85.1
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 86.1
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 86.1
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 88.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 9.4e-97 357.1 207 88.4
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.6e-96 356.3 207 87.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.6e-96 356.3 207 87.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 6.1e-96 354.4 207 86.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.1e-95 351.3 208 85.6
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 82.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 81.7
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.7e-94 347.8 207 84.5
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.1e-92 343.6 208 83.7
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.0e-90 337.0 178 93.8
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.3e-90 336.7 208 84.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-90 334.7 178 92.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 8.5e-90 334.0 208 86.1
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.1e-88 329.3 179 91.1
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.6e-88 328.6 178 91.6
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 3.0e-87 325.5 179 88.8
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.5e-86 323.2 206 82.0
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 4.8e-85 318.2 177 87.0
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.8e-84 316.2 190 84.2
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 3.1e-84 315.5 208 74.0
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.7e-83 310.8 210 80.0
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.8e-76 289.7 167 85.0
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.4e-76 289.3 205 73.7
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 9.1e-76 287.3 156 90.4
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.7e-75 285.8 156 90.4
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.7e-74 283.1 207 73.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.7e-69 265.4 211 70.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 5.4e-68 261.5 202 62.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.5e-67 258.8 203 61.1
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 6.6e-66 254.6 200 59.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.1e-65 253.8 206 67.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 8.0e-64 247.7 198 60.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.1e-60 237.3 162 76.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 3.5e-59 232.3 197 55.8
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.5e-57 226.1 120 91.7
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 9.5e-57 224.2 133 88.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 4.4e-54 215.3 207 53.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-53 213.8 151 75.5
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.7e-53 213.4 207 53.6
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.3e-50 203.8 148 71.6
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.1e-49 200.7 197 48.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.6e-49 198.4 209 56.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 6.8e-47 191.4 196 46.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.9e-41 173.3 231 42.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.2e-40 170.6 160 61.9
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 2.1e-40 169.9 98 83.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.8e-40 169.5 208 50.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.9e-34 149.1 206 47.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.1e-33 147.5 187 41.7
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 8.1e-32 141.4 99 74.7
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.1e-31 141.0 96 79.2
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.8e-31 138.3 74 93.2
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.2e-28 129.0 83 77.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.5e-27 125.9 92 71.7
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 8.7e-26 121.3 60 91.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.1e-25 120.9 135 53.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-22 110.2 73 79.5
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 4.4e-22 109.0 82 68.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.1e-20 104.4 60 83.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.9e-12 77.0 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.5e-09 67.4 62 62.9
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.4e-07 60.8 39 69.2
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 1.2e-06 57.8 137 25.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.2e-06 57.8 38 63.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 2.0e-06 57.0 51 60.8


User provided reference genes

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