Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18162 Davidia involucrata HOM05D000590 ORTHO05D009145 0.0e+00 3062.3 1561 100.0
Dinv18158 Davidia involucrata HOM05D000590 ORTHO05D009145 0.0e+00 2971.4 1654 93.3
CSS0004481 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D009145 0.0e+00 1363.2 1720 48.9
TAR636G2375 Trochodendron aralioides HOM05D000590 ORTHO05D009145 0.0e+00 1226.8 1712 45.6
vmacro11208 Vaccinium macrocarpon HOM05D000590 ORTHO05D009145 0.0e+00 1168.7 1699 44.8
Rhsim02G0205200 Rhododendron simsii HOM05D000590 ORTHO05D009145 0.0e+00 1149.4 1751 43.3
Cfa013108 Carpinus fangiana HOM05D000590 ORTHO05D009145 0.0e+00 1102.4 1688 43.1
vmacro21896 Vaccinium macrocarpon HOM05D000590 ORTHO05D009145 2.8e-310 1069.3 1537 44.9
Atru.chr7.2494 Acer truncatum HOM05D000590 ORTHO05D009145 3.2e-306 1055.8 1687 40.4
Haze_21466 Corylus avellana HOM05D000590 ORTHO05D009145 7.8e-305 1051.2 1744 42.0
QL02p020481 Quercus lobata HOM05D000590 ORTHO05D009145 6.6e-304 1048.1 1668 42.3
Actinidia22318 Actinidia chinensis HOM05D000590 ORTHO05D009145 6.7e-288 995.0 1657 42.3
Nn8g39696 Nelumbo nucifera HOM05D000590 ORTHO05D009145 3.0e-280 969.5 1719 39.7
Thecc.09G020000 Theobroma cacao HOM05D000590 ORTHO05D009145 3.1e-269 932.9 1683 38.8
Prupe.1G485700 Prunus persica HOM05D000590 ORTHO05D009145 2.3e-264 916.8 1703 38.7
CiPaw.07G226700 Carya illinoinensis HOM05D000590 ORTHO05D009145 6.7e-264 915.2 1675 39.3
Manes.03G012400 Manihot esculenta HOM05D000590 ORTHO05D009145 2.0e-255 887.1 1686 37.8
Duzib168G1510 Durio zibethinus HOM05D000590 ORTHO05D009145 5.7e-247 859.0 1685 37.7
GSVIVG01035925001 Vitis vinifera HOM05D000590 ORTHO05D009145 8.2e-246 855.1 1038 49.5
Potri.018G023000 Populus trichocarpa HOM05D000590 ORTHO05D009145 2.4e-245 853.6 1708 38.1
MD15G1130200 Malus domestica HOM05D000590 ORTHO05D009145 1.7e-235 820.8 1702 36.4
Sabra18G0025500 Salix brachista HOM05D000590 ORTHO05D009145 1.5e-231 807.7 1754 36.2
Oeu010890.3 Olea europaea HOM05D000590 ORTHO05D009145 2.1e-217 760.8 1640 37.1
FvH4_2g28350 Fragaria vesca HOM05D000590 ORTHO05D009145 2.5e-210 737.3 1755 33.6
RcHm_v2.0_Chr6g0297291 Rosa chinensis HOM05D000590 ORTHO05D009145 5.2e-208 729.6 1780 33.3
FAN24G2365 Fragaria x ananassa HOM05D000590 ORTHO05D009145 8.9e-208 728.8 1755 33.3
FAN20G2931 Fragaria x ananassa HOM05D000590 ORTHO05D009145 3.5e-204 716.8 1755 33.4
Cc08_g00250 Coffea canephora HOM05D000590 ORTHO05D009145 7.3e-202 709.1 1693 33.4
TWI32G0726 Tripterygium wilfordii HOM05D000590 ORTHO05D009145 9.9e-199 698.7 1650 34.5
FAN27G0748 Fragaria x ananassa HOM05D000590 ORTHO05D009145 3.8e-190 670.2 1699 32.7
Nitab4.5_0002992g0010 Nicotiana tabacum HOM05D028555 ORTHO05D009145 7.6e-175 619.4 1568 32.7
Actinidia13215 Actinidia chinensis HOM05D000590 ORTHO05D009145 3.3e-170 604.0 825 46.3
Nitab4.5_0005958g0030 Nicotiana tabacum HOM05D000590 ORTHO05D009145 2.3e-163 581.3 1542 32.2
CANSAT25G0126 Cannabis sativa HOM05D000590 ORTHO05D009145 3.0e-163 580.9 1645 32.5
Aqoxy7G03545 Aquilegia oxysepala HOM05D000590 ORTHO05D009145 4.0e-160 570.5 1730 30.8
Ciclev10010345m.g Citrus clementina HOM05D000590 ORTHO05D009145 1.4e-157 562.0 984 38.1
Gorai.001G035300 Gossypium raimondii HOM05D000590 ORTHO05D009145 3.3e-154 550.8 1296 35.0
ECA248G0426 Erigeron canadensis HOM05D000590 ORTHO05D009145 8.8e-147 526.2 1519 32.2
GSVIVG01035924001 Vitis vinifera HOM05D000590 ORTHO05D009145 3.3e-138 497.7 646 48.3
Glyma.14G112700 Glycine max HOM05D000590 ORTHO05D009145 6.5e-134 483.4 1675 30.1
HanXRQChr01g0030621 Helianthus annuus HOM05D000590 ORTHO05D009145 2.5e-133 481.5 1619 30.3
Glyma.17G215200 Glycine max HOM05D000590 ORTHO05D009145 3.2e-133 481.1 1698 30.4
Gohir.D07G033800 Gossypium hirsutum HOM05D000590 ORTHO05D009145 1.7e-118 432.2 920 36.6
Lsat_1_v5_gn_1_43780 Lactuca sativa HOM05D000590 ORTHO05D009145 2.9e-118 431.4 1540 30.6
Phvul.001G047700 Phaseolus vulgaris HOM05D000590 ORTHO05D009145 3.2e-117 427.9 1671 29.0
EL10Ac2g04159 Beta vulgaris HOM05D000590 ORTHO05D009145 3.0e-115 421.4 1683 28.2
Actinidia13216 Actinidia chinensis HOM05D000590 ORTHO05D009145 4.0e-115 421.0 697 42.8
TPR.G38859 Trifolium pratense HOM05D000590 ORTHO05D009145 1.9e-109 402.1 1355 30.6
ATR0767G168 Amborella trichopoda HOM05D000590 ORTHO05D009145 4.4e-106 391.0 1722 27.1
SalBow4G1906 Salvia bowleyana HOM05D000590 ORTHO05D009145 7.5e-106 390.2 1598 27.6
Ca_13040_v3 Cicer arietinum L. HOM05D000590 ORTHO05D009145 2.8e-105 388.3 1440 29.4
Ca_30354_v3 Cicer arietinum L. HOM05D000590 ORTHO05D009145 3.2e-104 384.8 1386 29.6
AUR62031566 Chenopodium quinoa HOM05D000590 ORTHO05D009145 3.5e-103 381.3 1689 27.2
AUR62012442 Chenopodium quinoa HOM05D000590 ORTHO05D009145 7.3e-101 373.6 1683 26.5
COL.COLO4_18904 Corchorus olitorius HOM05D000590 ORTHO05D009145 1.6e-100 372.5 768 35.8
Medtr1g012870 Medicago truncatula HOM05D000590 ORTHO05D009145 3.4e-98 364.8 1383 30.2
Lj7A728T60 Lonicera japonica HOM05D000590 ORTHO05D009145 5.8e-98 364.0 397 51.6
Hund04451 Selenicereus undatus HOM05D000590 ORTHO05D009145 1.1e-96 359.8 1666 27.0
THA.LOC104815012 Tarenaya hassleriana HOM05D000590 ORTHO05D009145 1.1e-88 333.2 1419 27.8
COL.COLO4_18905 Corchorus olitorius HOM05D000590 ORTHO05D009145 3.0e-78 298.5 563 39.4
Ah.10g035720 Amaranthus hybridus HOM05D000590 ORTHO05D009145 1.9e-77 295.8 1760 25.5
SGA_v2.0_scaffold64G21984 Striga asiatica HOM05D000590 ORTHO05D009145 3.6e-76 291.6 1682 26.0
Gohir.A07G030000 Gossypium hirsutum HOM05D000590 ORTHO05D009145 1.2e-74 286.6 584 38.0
Lj5g0001427 Lotus japonicus HOM05D000590 ORTHO05D009145 6.0e-71 274.2 1091 29.3
VMungo0647G0757 Vigna mungo HOM05D000590 ORTHO05D009145 8.1e-68 263.8 1967 23.1
Peaxi162Scf00116g00109 Petunia axillaris HOM05D000590 ORTHO05D009145 6.9e-59 234.2 624 31.9
Lj7P728T26 Lonicera japonica HOM05D000590 ORTHO05D009145 1.3e-49 203.4 284 45.1
arahy.Tifrunner.gnm1.ann1.Y6F8M2 Arachis hypogaea HOM05D000590 ORTHO05D009145 1.6e-47 196.4 518 31.1
Sc06g0000460 Simmondsia chinensis HOM05D000590 ORTHO05D009145 1.9e-40 172.9 573 29.7
SEGI_06897 Sequoiadendron giganteum HOM05D000590 ORTHO05D009145 4.2e-40 171.8 1747 22.1
Ciclev10010421m.g Citrus clementina HOM05D000590 ORTHO05D009145 3.3e-37 162.2 263 41.4
Sc06g0000480 Simmondsia chinensis HOM05D000590 ORTHO05D009145 6.7e-30 137.9 326 35.0
Lj5g0010657 Lotus japonicus HOM05D000590 ORTHO05D009145 7.4e-29 134.4 159 48.4
Sopen08g011880 Solanum pennellii HOM05D028555 ORTHO05D037312 4.8e-28 131.7 614 25.6
Duzib150G1205 Durio zibethinus HOM05D000590 ORTHO05D009145 2.2e-25 122.9 314 32.2
Mapoly0002s0198 Marchantia polymorpha HOM05D000590 ORTHO05D009145 1.4e-24 120.2 120 45.8
Pp3c1_28750 Physcomitrium patens HOM05D000590 ORTHO05D009145 6.7e-22 111.3 139 42.4
HPP92_000484 Vanilla planifolia HOM05D000590 ORTHO05D009145 6.7e-22 111.3 1215 21.0
CAN.G669.6 Capsicum annuum HOM05D000590 ORTHO05D009145 1.5e-21 110.2 140 49.3
Sc06g0000470 Simmondsia chinensis HOM05D000590 ORTHO05D009145 5.7e-21 108.2 472 25.8
Pp3c14_19990 Physcomitrium patens HOM05D000590 ORTHO05D009145 3.5e-18 99.0 92 45.7
Pp3c2_10000 Physcomitrium patens HOM05D000590 ORTHO05D009145 4.5e-18 98.6 155 38.1
arahy.Tifrunner.gnm1.ann1.P756VC Arachis hypogaea HOM05D000590 ORTHO05D009145 2.9e-17 95.9 441 26.1
Sopen08g011870 Solanum pennellii HOM05D000590 ORTHO05D009145 1.0e-14 87.4 87 48.3
SMO269G0045 Selaginella moellendorffii HOM05D000590 ORTHO05D009145 8.8e-14 84.3 322 27.6
Zm00001eb104540 Zea mays HOM05D000590 ORTHO05D009145 6.3e-12 78.2 122 34.4
MBI12_g40663_MAGBIO Magnolia biondii HOM05D009592 ORTHO05D010614 4.1e-11 75.5 108 44.4
Solyc08g041740.1 Solanum lycopersicum HOM05D000590 ORTHO05D009145 1.7e-09 70.1 154 34.4
Solyc08g041750.3 Solanum lycopersicum HOM05D028555 ORTHO05D037312 2.2e-09 69.7 276 28.6
Duzib150G0340 Durio zibethinus HOM05D000590 ORTHO05D009145 4.2e-08 65.5 217 30.0
Sopen08g011900 Solanum pennellii HOM05D000590 ORTHO05D009145 9.4e-08 64.3 198 28.3
CAN.G669.5 Capsicum annuum HOM05D000590 ORTHO05D009145 1.4e-06 60.5 151 27.8


User provided reference genes

Program Settings