Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 1.6e-80 302.8 161 100.0
Dinv16433 Davidia involucrata HOM05D000001 ORTHO05D009373 9.7e-17 90.9 70 64.3
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.7e-13 80.1 62 72.6
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.2e-12 75.9 62 69.4
Hma1.2p1_0621F.1_g190610 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 9.4e-12 74.3 62 75.8
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.6e-11 73.6 62 67.7
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 3.6e-11 72.4 67 68.7
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 4.7e-11 72.0 62 67.7
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 6.1e-11 71.6 62 64.5
MBI04_g13621_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.1e-11 71.6 65 66.2
Ca_05436_v3 Cicer arietinum L. HOM05D005524 ORTHO05D005392 8.0e-11 71.2 59 71.2
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.0e-10 70.9 67 67.2
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.8e-10 70.1 62 66.1
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.0e-10 69.3 62 66.1
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 3.0e-10 69.3 63 66.7
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 3.0e-10 69.3 62 64.5
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 3.0e-10 69.3 59 67.8
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.7e-10 68.2 62 64.5
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 6.7e-10 68.2 63 65.1
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 6.7e-10 68.2 65 63.1
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 8.8e-10 67.8 62 61.3
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.5e-09 67.0 62 66.1
MBI01_g27620_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 1.5e-09 67.0 64 68.8
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 2.0e-09 66.6 62 59.7
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.0e-09 66.6 62 64.5
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.6e-09 66.2 62 59.7
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.6e-09 66.2 62 59.7
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 2.6e-09 66.2 67 64.2
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 2.6e-09 66.2 63 63.5
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 2.6e-09 66.2 64 67.2
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 3.3e-09 65.9 62 58.1
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 3.3e-09 65.9 62 58.1
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 3.3e-09 65.9 89 50.6
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 4.4e-09 65.5 62 58.1
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 5.7e-09 65.1 62 56.5
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 7.4e-09 64.7 62 58.1
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 7.4e-09 64.7 62 58.1
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 7.4e-09 64.7 62 58.1
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 7.4e-09 64.7 62 54.8
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 7.4e-09 64.7 60 60.0
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 9.7e-09 64.3 63 61.9
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.2e-08 63.2 62 59.7
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 2.2e-08 63.2 64 53.1
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.8e-08 62.8 64 54.7
MBI04_g13622_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 2.8e-08 62.8 62 58.1
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.8e-08 62.8 62 59.7
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 3.7e-08 62.4 62 58.1
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.7e-08 62.4 64 56.2
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 4.8e-08 62.0 63 58.7
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 4.8e-08 62.0 62 62.9
Glyma.02G180200 Glycine max HOM05D005524 ORTHO05D005392 6.3e-08 61.6 59 62.7
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 8.2e-08 61.2 63 58.7
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 8.2e-08 61.2 62 58.1
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.1e-07 60.8 63 60.3
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 1.4e-07 60.5 65 60.0
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.4e-07 60.5 63 60.3
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 2.4e-07 59.7 63 58.7
Nn2g15425 Nelumbo nucifera HOM05D005524 ORTHO05D005392 2.4e-07 59.7 70 61.4
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 2.4e-07 59.7 62 56.5
TPR.G3828 Trifolium pratense HOM05D005524 ORTHO05D005392 2.4e-07 59.7 66 50.0
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 3.1e-07 59.3 63 58.7
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 3.1e-07 59.3 63 58.7
Rhsim03G0011800 Rhododendron simsii HOM05D005524 ORTHO05D005392 3.1e-07 59.3 62 62.9
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 58.7
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 4.1e-07 58.9 63 57.1
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 7.0e-07 58.2 62 54.8
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 7.0e-07 58.2 60 56.7
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 9.1e-07 57.8 63 55.6
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 9.1e-07 57.8 64 50.0
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 1.6e-06 57.0 63 55.6
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 1.6e-06 57.0 64 50.0
MELO3C009064.2 Cucumis melo HOM05D019173 ORTHO05D005392 2.0e-06 56.6 63 55.6
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 2.0e-06 56.6 67 53.7
Nn7g36174 Nelumbo nucifera HOM05D005524 ORTHO05D005392 2.0e-06 56.6 41 73.2
Lalb_Chr01g0017541 Lupinus albus HOM05D005524 ORTHO05D005392 3.5e-06 55.8 59 55.9
Aqoxy2G00114 Aquilegia oxysepala HOM05D005524 ORTHO05D005392 4.5e-06 55.5 62 59.7
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.5e-06 55.5 62 56.5
Hma1.2p1_0728F.1_g209250 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 4.5e-06 55.5 62 56.5
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 5.9e-06 55.1 62 53.2
COL.COLO4_28709 Corchorus olitorius HOM05D005524 ORTHO05D005392 5.9e-06 55.1 63 57.1
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 5.9e-06 55.1 60 56.7
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 5.9e-06 55.1 64 46.9
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 7.7e-06 54.7 56 60.7


User provided reference genes

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