Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 4.2e-61 238.0 139 100.0
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 5.8e-18 94.7 142 47.9
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 5.3e-11 71.6 116 44.8
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 9.0e-11 70.9 80 55.0
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 9.0e-11 70.9 80 55.0
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 3.4e-10 68.9 79 54.4
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 3.4e-10 68.9 79 54.4
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 4.4e-10 68.6 79 53.2
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 1.7e-09 66.6 79 50.6
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 1.7e-09 66.6 84 50.0
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 2.2e-09 66.2 80 50.0
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 2.9e-09 65.9 79 53.2
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 3.8e-09 65.5 80 50.0
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 6.4e-09 64.7 79 50.6
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 6.4e-09 64.7 79 51.9
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 6.4e-09 64.7 78 51.3
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 8.4e-09 64.3 79 50.6
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 8.4e-09 64.3 79 50.6
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 8.4e-09 64.3 90 48.9
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 1.1e-08 63.9 85 44.7
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 1.4e-08 63.5 135 39.3
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 1.9e-08 63.2 79 51.9
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 2.4e-08 62.8 84 45.2
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 2.4e-08 62.8 85 47.1
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 3.2e-08 62.4 110 40.9
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 4.2e-08 62.0 81 46.9
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 4.2e-08 62.0 81 48.1
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 4.2e-08 62.0 76 51.3
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 5.4e-08 61.6 76 53.9
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 5.4e-08 61.6 76 47.4
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 5.4e-08 61.6 83 49.4
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 7.1e-08 61.2 79 50.6
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 7.1e-08 61.2 79 50.6
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 7.1e-08 61.2 83 49.4
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 7.1e-08 61.2 83 49.4
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 7.1e-08 61.2 85 44.7
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 7.1e-08 61.2 77 50.6
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 9.3e-08 60.8 78 52.6
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 9.3e-08 60.8 78 52.6
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 9.3e-08 60.8 78 52.6
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 9.3e-08 60.8 82 47.6
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.2e-07 60.5 77 50.6
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.2e-07 60.5 77 51.9
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.6e-07 60.1 78 48.7
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 1.6e-07 60.1 83 44.6
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 2.1e-07 59.7 76 47.4
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 2.1e-07 59.7 79 50.6
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 2.7e-07 59.3 84 45.2
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 2.7e-07 59.3 76 50.0
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 2.7e-07 59.3 76 50.0
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 2.7e-07 59.3 84 46.4
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 4.6e-07 58.5 79 49.4
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.6e-07 58.5 77 49.4
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 6.0e-07 58.2 76 47.4
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 7.9e-07 57.8 76 43.4
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 7.9e-07 57.8 76 47.4
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.0e-06 57.4 76 46.1
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 1.0e-06 57.4 75 48.0
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 1.0e-06 57.4 76 47.4
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 1.3e-06 57.0 81 42.0
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 1.3e-06 57.0 79 48.1
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.3e-06 57.0 79 49.4
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.3e-06 57.0 81 49.4
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 1.7e-06 56.6 79 46.8
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 1.7e-06 56.6 83 44.6
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.7e-06 56.6 83 42.2
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 1.7e-06 56.6 80 45.0
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.7e-06 56.6 119 39.5
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 1.7e-06 56.6 75 48.0
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.7e-06 56.6 75 48.0
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 1.7e-06 56.6 75 48.0
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 2.3e-06 56.2 79 46.8
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 2.3e-06 56.2 84 44.0
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 2.3e-06 56.2 76 46.1
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 3.0e-06 55.8 125 37.6
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.0e-06 55.8 79 44.3
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 3.9e-06 55.5 76 47.4
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 3.9e-06 55.5 77 46.8
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 5.1e-06 55.1 76 44.7
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 6.6e-06 54.7 121 37.2
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 8.7e-06 54.3 79 44.3
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 8.7e-06 54.3 76 46.1
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 8.7e-06 54.3 83 42.2


User provided reference genes

Program Settings