Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 4.8e-109 397.9 209 100.0
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 8.3e-61 237.7 138 92.0
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-60 236.9 138 92.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-60 236.9 138 92.0
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.9e-60 236.5 138 91.3
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 4.1e-60 235.3 139 92.8
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 9.2e-60 234.2 138 90.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.2e-59 233.8 138 89.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-59 233.4 138 90.6
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.6e-59 233.4 140 90.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.6e-59 231.9 138 89.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-58 230.7 138 89.9
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.0e-58 230.7 144 86.8
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.0e-58 230.7 138 89.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-58 229.9 139 89.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.3e-58 229.6 140 90.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.0e-58 229.2 139 90.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 3.9e-58 228.8 139 89.2
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.9e-58 228.8 138 88.4
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.1e-58 228.4 139 89.2
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.1e-57 227.3 138 87.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-57 227.3 138 87.7
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.1e-57 227.3 139 88.5
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.9e-57 226.5 139 88.5
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.5e-57 226.1 138 87.0
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.3e-57 225.3 139 89.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 5.6e-57 224.9 139 87.8
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-56 223.8 138 89.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.6e-56 222.2 139 84.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 4.7e-56 221.9 141 86.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.7e-56 221.9 138 84.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 8.1e-56 221.1 139 86.3
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.1e-55 220.7 139 86.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-55 220.7 138 85.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.4e-55 220.3 141 85.1
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.8e-55 219.9 139 86.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.8e-55 219.9 139 83.5
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.1e-55 219.2 141 85.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 4.0e-55 218.8 138 84.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 4.0e-55 218.8 140 85.0
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 4.0e-55 218.8 139 85.6
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 5.2e-55 218.4 140 82.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 6.8e-55 218.0 137 83.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 6.8e-55 218.0 138 86.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 6.8e-55 218.0 139 84.9
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 8.9e-55 217.6 140 84.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.0e-54 216.5 137 83.2
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.6e-54 216.1 139 82.7
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.4e-54 215.7 140 84.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 4.4e-54 215.3 137 83.2
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.4e-54 215.3 138 84.8
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 5.8e-54 214.9 138 85.5
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 5.8e-54 214.9 139 83.5
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.5e-54 214.5 138 82.6
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 7.5e-54 214.5 142 83.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 7.5e-54 214.5 143 83.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.3e-53 213.8 143 79.7
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.3e-53 213.8 139 84.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.7e-53 213.4 138 81.2
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.7e-53 213.4 143 82.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.7e-53 213.4 140 82.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.2e-53 213.0 138 81.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 3.7e-53 212.2 139 83.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 3.7e-53 212.2 139 83.5
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 4.9e-53 211.8 138 82.6
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 6.4e-53 211.5 138 80.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 6.4e-53 211.5 137 81.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 8.3e-53 211.1 137 81.8
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.4e-52 210.3 141 81.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.9e-52 209.9 140 81.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.4e-52 209.5 141 80.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.4e-52 209.5 137 81.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 5.4e-52 208.4 137 81.0
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 9.2e-52 207.6 140 81.4
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 9.2e-52 207.6 140 80.0
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.2e-51 207.2 140 80.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.2e-51 207.2 147 76.9
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.6e-51 206.8 140 79.3
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.1e-51 206.5 141 80.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.7e-51 206.1 168 70.8
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.8e-51 204.5 148 78.4
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.0e-50 204.1 138 79.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.0e-50 204.1 138 79.0
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 6.6e-50 201.4 152 74.3
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 8.6e-50 201.1 151 74.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 8.6e-50 201.1 151 74.8
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.9e-49 199.9 149 75.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.3e-49 199.1 138 77.5
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.2e-48 197.2 142 74.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.6e-48 196.8 141 79.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.1e-48 196.4 160 68.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.6e-48 195.7 173 64.7
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 8.1e-48 194.5 112 92.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 8.1e-48 194.5 143 74.8
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.8e-47 193.4 140 75.7
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 4.0e-47 192.2 140 75.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.0e-47 192.2 141 76.6
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 8.9e-47 191.0 152 71.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-46 190.7 144 72.9
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-46 189.9 155 70.3
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-46 189.9 155 70.3
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.8e-46 188.3 144 71.5
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 9.9e-46 187.6 176 64.2
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.2e-45 186.4 113 88.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.8e-45 185.7 146 71.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 6.4e-45 184.9 134 75.4
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 8.4e-45 184.5 168 63.7
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 8.4e-45 184.5 148 69.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.4e-44 183.0 136 71.3
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.6e-43 178.7 134 74.6
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-42 177.2 114 81.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.3e-42 177.2 136 73.5
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-41 173.3 115 81.7
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.6e-40 169.1 113 81.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 8.1e-40 167.9 166 57.2
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.4e-39 166.4 138 63.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 5.3e-39 165.2 126 77.0
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.4e-38 162.5 112 78.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.4e-38 162.5 119 76.5
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.3e-37 160.6 139 66.9
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.5e-35 152.5 134 65.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.0e-34 149.4 134 66.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 6.6e-34 148.3 144 63.2
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 8.7e-34 147.9 97 82.5
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 3.3e-33 146.0 136 60.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 4.3e-33 145.6 131 64.9
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.4e-31 140.6 108 71.3
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.4e-31 139.8 168 53.6
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.5e-30 135.6 118 63.6
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 3.8e-29 132.5 131 58.8
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 3.8e-29 132.5 154 54.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.2e-28 129.0 81 88.9
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.1e-27 126.7 114 64.9
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.3e-26 124.0 85 78.8
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.8e-26 123.6 77 89.6
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-26 123.2 80 85.0
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.3e-26 123.2 80 85.0
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-26 122.9 80 85.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-26 121.3 138 55.1
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.5e-25 120.6 76 88.2
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.9e-25 120.2 85 76.5
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.6e-24 117.1 156 47.4
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-22 110.9 70 78.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.0e-22 110.2 69 82.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.5e-22 109.0 69 85.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.9e-21 105.5 64 85.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 9.3e-20 101.3 100 63.0
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 5.7e-17 92.0 70 70.0
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.9e-15 85.1 77 61.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.2e-14 84.3 69 69.6
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.6e-14 83.2 57 80.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.9e-13 79.7 134 39.6
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 9.3e-12 74.7 72 61.1
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 9.3e-12 74.7 72 61.1
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 5.1e-10 68.9 58 62.1
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 8.2e-08 61.6 51 62.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 8.2e-08 61.6 49 65.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.4e-07 60.8 51 62.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-06 57.4 110 42.7
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-06 57.4 42 64.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.5e-06 57.4 110 42.7
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.5e-06 57.4 42 64.3


User provided reference genes

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