Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.3e-109 399.8 207 100.0
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.4e-68 262.7 203 69.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.2e-65 252.3 198 69.7
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.4e-65 250.8 199 67.3
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.2e-58 229.6 162 78.4
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.5e-57 226.1 204 61.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-55 220.3 201 63.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.0e-55 219.2 193 64.2
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.0e-55 218.8 193 64.2
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 6.8e-55 218.0 192 63.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 5.4e-52 208.4 205 60.0
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.4e-52 208.4 194 60.8
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 3.5e-51 205.7 173 68.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.5e-51 205.3 196 63.3
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 5.9e-51 204.9 203 61.6
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.7e-51 204.5 195 58.5
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.0e-50 204.1 199 59.8
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.7e-50 203.4 207 59.9
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.7e-50 203.4 213 59.6
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.5e-49 200.3 194 59.8
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-49 199.9 162 65.4
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.9e-49 199.9 184 60.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.5e-49 199.5 212 58.0
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.2e-49 198.0 207 58.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 4.7e-48 195.3 196 56.1
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.1e-48 194.9 205 58.5
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 8.0e-48 194.5 192 57.3
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 4.0e-47 192.2 194 57.7
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 5.2e-47 191.8 202 58.9
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 5.2e-47 191.8 194 57.7
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 8.9e-47 191.0 190 59.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.2e-46 190.7 192 58.3
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.0e-46 189.9 199 58.8
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 3.4e-46 189.1 203 57.6
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.4e-46 189.1 210 57.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 7.5e-46 188.0 206 55.8
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.5e-46 188.0 213 58.2
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 9.8e-46 187.6 188 59.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.3e-45 187.2 200 56.5
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 4.9e-45 185.3 206 56.3
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.1e-44 182.6 209 54.1
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 9.2e-44 181.0 203 54.7
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.2e-43 180.6 205 53.7
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.6e-43 180.3 197 55.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.5e-43 178.7 198 54.5
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.5e-41 172.9 195 53.8
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 9.5e-41 171.0 205 51.2
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.1e-40 169.9 167 57.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.0e-40 167.9 193 54.4
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 8.0e-40 167.9 190 55.8
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.0e-39 167.5 207 51.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-39 167.2 193 54.4
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.3e-39 166.4 193 54.4
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.0e-39 165.6 203 52.7
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 5.2e-39 165.2 197 51.8
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.5e-38 163.7 198 57.1
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 4.4e-38 162.2 188 54.8
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.5e-38 161.4 169 57.4
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.7e-37 160.2 195 52.3
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.7e-37 159.1 190 50.5
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.7e-37 159.1 201 50.2
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.7e-37 159.1 199 50.3
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 3.7e-37 159.1 168 53.0
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 6.4e-37 158.3 194 51.0
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.4e-37 158.3 204 51.0
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-36 157.1 200 51.0
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.4e-36 156.4 192 52.6
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 4.1e-36 155.6 201 48.8
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 7.0e-36 154.8 179 50.8
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.0e-36 154.8 190 52.1
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.3e-34 149.8 206 50.0
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 3.0e-34 149.4 191 48.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 3.9e-34 149.1 207 49.8
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.5e-33 147.1 220 48.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.9e-33 146.7 190 51.6
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.2e-32 144.1 182 54.9
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.2e-32 144.1 201 48.8
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.1e-32 143.3 186 49.5
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 6.2e-32 141.7 144 57.6
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.8e-31 140.2 204 43.1
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.1e-31 139.4 196 48.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 8.9e-31 137.9 203 47.8
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.0e-30 136.7 190 46.8
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.0e-30 136.7 190 46.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 2.6e-30 136.3 148 58.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 4.4e-30 135.6 216 47.2
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.8e-30 134.4 192 48.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.9e-29 132.9 170 48.2
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.1e-28 129.0 216 44.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 7.0e-28 128.3 195 47.2
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 9.2e-28 127.9 187 45.5
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.2e-27 127.5 173 52.6
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 2.1e-27 126.7 205 44.9
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 4.6e-27 125.6 203 47.3
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 4.6e-27 125.6 203 42.4
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 6.0e-27 125.2 200 45.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 6.0e-27 125.2 191 45.5
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 6.0e-27 125.2 186 45.2
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.0e-26 122.9 185 48.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.9e-26 122.5 208 45.7
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 5.1e-26 122.1 192 45.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.5e-25 120.6 138 54.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.5e-25 120.6 138 54.3
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.9e-25 120.2 192 41.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.5e-25 119.8 164 46.3
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.3e-25 119.4 197 43.1
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 5.6e-25 118.6 207 44.4
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.2e-24 117.5 198 45.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 3.1e-23 112.8 179 45.3
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 4.0e-23 112.5 150 48.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 3.4e-22 109.4 170 45.3
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.4e-22 109.4 201 39.3
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.9e-20 103.6 188 41.0
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.1e-20 102.4 201 40.8
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 4.1e-20 102.4 189 42.3
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 7.1e-20 101.7 212 42.5
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 9.2e-20 101.3 182 45.1
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.6e-19 100.5 180 41.7
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 2.1e-19 100.1 119 55.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 4.6e-19 99.0 193 39.4
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 6.0e-19 98.6 180 41.7
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 6.0e-19 98.6 180 41.7
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 7.8e-19 98.2 133 53.4
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 7.8e-19 98.2 196 37.8
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 7.8e-19 98.2 200 39.0
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.0e-18 97.8 197 41.6
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.7e-18 97.1 200 38.5
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-18 97.1 190 40.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 2.3e-18 96.7 192 41.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-18 95.9 179 39.1
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.9e-18 95.9 190 40.5
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 5.1e-18 95.5 180 39.4
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.1e-18 95.5 199 39.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 6.6e-18 95.1 190 40.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 6.6e-18 95.1 190 40.5
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.9e-17 93.6 179 38.5
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.9e-17 93.6 60 81.7
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 3.3e-17 92.8 177 40.1
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 4.3e-17 92.4 198 38.4
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.6e-16 89.4 89 52.8
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 8.1e-16 88.2 93 54.8
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.1e-15 87.8 181 42.5
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.4e-15 86.7 191 38.7
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 6.8e-15 85.1 193 38.9
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 8.9e-15 84.7 169 39.6
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 3.4e-14 82.8 208 37.0
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 7.6e-14 81.6 185 36.2
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 9.9e-14 81.3 110 49.1
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 9.9e-14 81.3 180 37.2
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.1e-12 77.8 207 36.7
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.2e-11 74.3 227 31.7
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 3.5e-11 72.8 194 33.5
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.5e-11 72.8 183 35.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 5.1e-10 68.9 208 33.7
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 8.7e-10 68.2 160 34.4
Nitab4.5_0003738g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-08 64.3 69 53.6
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 1.6e-08 63.9 174 35.1
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 1.6e-08 63.9 63 60.3
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 4.7e-08 62.4 181 32.6
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 8.1e-08 61.6 136 37.5
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.4e-07 60.8 170 36.5
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 9.0e-07 58.2 65 55.4
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.5e-06 57.4 67 47.8


User provided reference genes

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