Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 7.2e-164 580.5 287 100.0
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.5e-145 519.6 287 87.1
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 4.4e-145 518.1 287 87.8
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.4e-145 518.1 287 86.8
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 1.3e-144 516.5 287 86.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.2e-144 515.8 287 87.1
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.7e-144 515.0 287 86.8
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 2.4e-143 512.3 287 86.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.1e-143 511.9 287 86.1
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.1e-143 511.5 287 84.7
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 9.1e-143 510.4 287 85.7
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.2e-142 510.0 287 85.7
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.0e-141 506.9 287 84.7
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.3e-141 506.5 287 84.0
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.9e-141 505.4 287 86.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 3.8e-141 505.0 286 84.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.8e-141 505.0 287 85.4
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 6.5e-141 504.2 287 84.0
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 8.6e-141 503.8 287 85.0
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 8.6e-141 503.8 287 83.6
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 3.3e-140 501.9 287 85.0
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.2e-140 501.5 287 83.3
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 7.2e-140 500.7 288 84.7
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 7.2e-140 500.7 287 84.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 7.2e-140 500.7 287 83.6
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.5e-140 500.4 287 84.3
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.1e-139 499.2 317 78.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 8.0e-139 497.3 287 82.6
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.2e-137 493.4 287 81.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.5e-137 493.0 317 77.6
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.0e-137 492.7 287 81.9
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.7e-137 491.1 287 82.2
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 7.5e-137 490.7 287 81.9
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.2e-136 489.2 287 83.6
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.8e-136 488.8 287 82.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.4e-135 486.5 276 85.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.4e-135 486.5 287 81.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.4e-135 485.7 287 82.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.4e-135 485.7 287 81.9
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 4.1e-135 485.0 287 81.5
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 5.4e-135 484.6 287 80.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.6e-134 483.0 287 81.9
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.0e-134 482.6 288 81.2
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.7e-134 482.3 287 80.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.7e-134 482.3 287 81.2
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 3.5e-134 481.9 287 80.5
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.3e-133 479.9 294 79.6
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.3e-133 479.9 314 76.4
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 5.6e-132 474.6 288 80.2
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 9.5e-132 473.8 287 81.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-131 473.4 288 79.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.2e-131 473.4 287 79.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 3.6e-131 471.9 287 81.2
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.6e-131 471.9 317 73.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.6e-131 471.9 288 79.5
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.1e-131 471.1 287 79.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.0e-130 470.3 287 78.0
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.0e-130 470.3 287 78.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.0e-130 468.8 287 78.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 6.8e-130 467.6 287 77.7
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.2e-129 466.8 287 78.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 5.8e-129 464.5 287 77.4
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 9.8e-129 463.8 287 77.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 9.8e-129 463.8 287 79.4
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.9e-128 462.2 287 77.4
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 4.9e-128 461.5 288 77.4
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 6.4e-128 461.1 287 77.4
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 8.3e-128 460.7 287 77.7
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.2e-126 456.8 287 78.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.0e-126 456.1 287 76.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.7e-126 455.7 287 75.6
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 7.8e-126 454.1 287 74.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 8.6e-125 450.7 287 78.4
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.5e-124 449.1 287 74.6
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.3e-124 448.7 285 74.4
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.3e-124 448.7 287 75.3
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 4.3e-124 448.4 287 76.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 4.3e-124 448.4 287 76.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 4.3e-124 448.4 287 75.6
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 5.6e-124 448.0 287 77.4
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.2e-123 446.8 287 73.5
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 4.7e-123 444.9 287 74.9
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 4.7e-123 444.9 287 74.9
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 4.7e-123 444.9 287 73.9
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 8.9e-122 440.7 287 74.2
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.4e-121 438.7 287 72.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 4.4e-121 438.3 286 72.4
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-119 433.7 287 74.6
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.2e-119 432.2 287 72.5
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 9.2e-119 430.6 288 74.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 9.2e-119 430.6 252 80.6
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-117 427.2 287 73.2
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.1e-117 424.9 287 72.8
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.5e-116 422.5 287 72.8
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.6e-116 421.4 287 72.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 9.5e-116 420.6 287 71.8
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 9.5e-116 420.6 287 72.5
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.2e-115 420.2 287 73.9
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.2e-115 420.2 286 66.4
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-114 416.8 287 73.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.4e-114 416.8 287 72.1
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-114 415.2 287 72.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 4.0e-114 415.2 287 72.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 5.2e-114 414.8 287 72.8
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 5.2e-114 414.8 287 72.8
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.0e-113 412.9 287 67.9
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 4.4e-113 411.8 285 69.1
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 5.8e-113 411.4 289 72.0
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 7.5e-113 411.0 287 72.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.2e-112 409.5 256 77.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 4.9e-112 408.3 287 65.2
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 8.3e-112 407.5 283 73.1
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.9e-111 406.4 288 71.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.4e-111 406.0 287 72.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.7e-110 402.5 287 69.3
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 4.6e-110 401.7 288 69.8
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 6.0e-110 401.4 289 68.9
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.3e-109 400.2 252 77.8
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.7e-109 399.8 404 53.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.3e-108 395.6 284 69.0
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 9.5e-108 394.0 288 68.4
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 9.5e-108 394.0 290 70.3
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.8e-107 392.5 288 68.1
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-107 392.1 288 68.1
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-106 388.7 288 67.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.0e-105 386.3 288 67.0
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 3.4e-105 385.6 288 67.7
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 3.4e-105 385.6 288 67.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 3.4e-105 385.6 288 67.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 3.4e-105 385.6 288 67.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-104 383.6 288 67.0
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.9e-104 381.7 272 68.8
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 6.4e-104 381.3 288 67.0
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.0e-101 372.5 248 74.6
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-98 364.0 202 85.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.1e-95 354.0 295 59.0
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.7e-94 349.4 251 69.3
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 8.7e-93 344.4 252 64.3
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 4.9e-80 302.0 171 86.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 6.9e-58 228.4 282 42.2
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-56 224.6 171 65.5
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-54 216.5 160 66.2
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.7e-54 216.5 290 42.4
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.2e-49 201.1 258 46.1
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 3.7e-43 179.5 248 46.8
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-32 143.7 189 44.4
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.4e-28 129.8 72 81.9
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.1e-26 124.8 173 46.2
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.1e-15 88.2 280 26.1
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.6e-14 84.3 56 69.6
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 8.0e-14 82.0 39 89.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 2.6e-12 77.0 40 85.0


User provided reference genes

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