Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.9e-89 332.4 162 100.0
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.4e-87 326.2 159 99.4
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.7e-75 285.4 159 84.3
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 3.0e-74 282.0 159 83.0
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 6.6e-74 280.8 159 81.8
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 1.9e-73 279.3 159 83.6
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.5e-73 278.9 159 80.5
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.3e-73 278.5 159 80.5
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 4.3e-73 278.1 159 81.1
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 4.3e-73 278.1 159 81.1
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 4.3e-73 278.1 159 81.1
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 9.6e-73 276.9 159 81.1
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.3e-72 276.6 159 80.5
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 1.6e-72 276.2 158 81.6
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 2.1e-72 275.8 158 81.6
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.8e-72 275.4 158 81.0
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 6.2e-72 274.2 158 81.0
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.1e-71 271.9 159 78.6
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 4.0e-71 271.6 159 81.8
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 4.0e-71 271.6 159 79.2
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 4.0e-71 271.6 159 81.1
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 5.3e-71 271.2 159 78.0
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 5.3e-71 271.2 159 77.4
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 6.9e-71 270.8 159 77.4
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 6.9e-71 270.8 159 77.4
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.2e-70 270.0 159 79.2
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.0e-70 269.2 160 77.5
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 4.5e-70 268.1 157 77.1
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 5.8e-70 267.7 159 78.0
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 7.6e-70 267.3 159 77.4
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 9.9e-70 266.9 159 78.0
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 9.9e-70 266.9 159 77.4
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.3e-69 266.5 159 76.7
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.7e-69 266.2 159 79.2
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 2.2e-69 265.8 159 77.4
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 2.9e-69 265.4 159 77.4
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 2.9e-69 265.4 159 77.4
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 4.9e-69 264.6 159 76.1
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 4.9e-69 264.6 159 78.6
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 6.4e-69 264.2 159 78.6
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 8.4e-69 263.8 159 76.7
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 8.4e-69 263.8 159 76.7
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 8.4e-69 263.8 159 74.2
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 8.4e-69 263.8 159 78.0
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.1e-68 263.5 159 77.4
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.1e-68 263.5 159 76.7
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.1e-68 263.5 159 77.4
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.4e-68 263.1 159 76.7
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 1.4e-68 263.1 159 75.5
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.4e-68 263.1 160 79.4
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.9e-68 262.7 159 79.9
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.9e-68 262.7 157 78.3
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.4e-68 262.3 159 76.1
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 3.2e-68 261.9 159 75.5
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 3.2e-68 261.9 159 75.5
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 4.2e-68 261.5 159 76.1
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 4.2e-68 261.5 159 76.7
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 5.5e-68 261.2 159 74.8
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 5.5e-68 261.2 159 76.1
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 5.5e-68 261.2 159 78.0
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 7.1e-68 260.8 159 76.7
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 7.1e-68 260.8 159 76.7
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 9.3e-68 260.4 159 75.5
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 9.3e-68 260.4 154 78.6
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 9.3e-68 260.4 159 76.1
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.2e-67 260.0 159 74.2
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.2e-67 260.0 159 74.2
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.2e-67 260.0 159 73.6
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.2e-67 260.0 159 74.8
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.6e-67 259.6 159 76.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.1e-67 259.2 152 80.3
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 2.1e-67 259.2 159 76.7
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 2.7e-67 258.8 159 75.5
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 4.6e-67 258.1 159 74.2
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 6.0e-67 257.7 159 75.5
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 1.3e-66 256.5 159 78.0
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 2.3e-66 255.8 159 74.2
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 3.0e-66 255.4 159 73.6
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 3.9e-66 255.0 159 71.7
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 5.1e-66 254.6 159 77.4
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 5.1e-66 254.6 159 72.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 6.7e-66 254.2 159 73.6
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.9e-65 252.7 159 75.5
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 5.6e-65 251.1 153 76.5
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 5.6e-65 251.1 159 71.7
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.4e-65 250.8 184 65.8
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 9.6e-65 250.4 159 72.3
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.5e-62 243.0 160 70.6
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 4.5e-62 241.5 159 72.3
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 5.8e-62 241.1 159 72.3
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 7.6e-62 240.7 156 74.4
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 8.4e-61 237.3 159 70.4
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.9e-60 236.1 160 70.0
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.0e-58 230.3 143 70.6
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.6e-56 223.0 160 65.0
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.1e-51 206.1 153 61.4
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 7.9e-51 204.1 144 63.9
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 6.9e-47 191.0 142 60.6
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 5.9e-46 188.0 159 59.1
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.2e-44 182.2 159 59.1
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 4.2e-44 181.8 109 77.1
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.6e-43 179.9 107 75.7
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.6e-43 178.7 159 57.9
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 4.6e-43 178.3 159 57.2
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 4.6e-43 178.3 123 69.9
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.4e-42 176.8 149 59.1
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 8.8e-42 174.1 108 74.1
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 1.3e-40 170.2 102 74.5
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 1.7e-40 169.9 148 57.4
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 9.1e-39 164.1 101 72.3
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.5e-36 156.0 91 84.6
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.5e-36 156.0 91 84.6
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.5e-36 154.8 90 84.4
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 7.9e-35 151.0 91 80.2
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 7.4e-33 144.4 86 74.4
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.8e-32 142.5 177 43.5
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.8e-32 142.5 177 43.5
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 3.7e-32 142.1 138 52.2
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 7.7e-30 134.4 94 61.7
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.7e-24 116.7 68 72.1
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 2.8e-24 115.9 76 68.4
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 4.8e-24 115.2 75 64.0
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 4.5e-22 108.6 63 69.8
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 5.9e-22 108.2 60 80.0
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 2.9e-21 105.9 60 85.0
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.2e-19 100.5 60 80.0
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.9e-13 79.3 49 79.6
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 2.7e-11 72.8 96 45.8
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 8.8e-10 67.8 45 75.6
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 8.8e-10 67.8 45 75.6
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 8.8e-10 67.8 45 75.6
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 9.8e-09 64.3 54 57.4
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.4e-07 59.7 140 32.9
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 7.7e-06 54.7 96 31.2


User provided reference genes

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