Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.6e-169 599.4 303 100.0
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.7e-155 552.7 300 91.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.0e-153 544.3 303 89.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.1e-149 533.5 300 88.3
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.8e-149 532.7 303 88.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.0e-149 531.6 303 87.5
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 4.5e-148 528.1 300 86.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.0e-147 526.9 301 88.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.3e-147 526.6 300 86.0
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.9e-147 525.4 302 85.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 3.8e-147 525.0 316 82.9
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 6.5e-147 524.2 303 86.5
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 2.5e-146 522.3 300 85.7
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 7.1e-146 520.8 300 85.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.1e-145 519.2 303 86.1
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.7e-145 518.8 300 85.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.7e-145 518.8 300 85.0
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.7e-145 518.8 300 84.7
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-144 516.5 303 84.8
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.8e-144 516.2 303 85.5
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.8e-144 516.2 300 84.7
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.8e-144 516.2 300 84.0
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.8e-144 516.2 303 85.1
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 3.0e-144 515.4 301 86.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 3.0e-144 515.4 303 85.1
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.9e-144 515.0 303 83.8
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.9e-144 515.0 303 84.8
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.9e-144 515.0 301 84.7
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.7e-144 514.2 300 83.7
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 8.7e-144 513.8 300 83.7
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 8.7e-144 513.8 300 83.7
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.1e-143 513.5 303 84.8
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.9e-143 512.7 303 83.5
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-143 512.3 299 84.9
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.5e-143 512.3 300 84.0
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 3.3e-143 511.9 303 84.2
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 3.3e-143 511.9 303 85.5
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 4.3e-143 511.5 300 84.3
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 5.7e-143 511.1 303 83.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 9.6e-143 510.4 301 83.1
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 9.6e-143 510.4 303 83.8
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.6e-142 509.6 303 83.8
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.6e-142 509.6 303 82.2
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 2.1e-142 509.2 303 84.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 2.8e-142 508.8 303 84.5
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.7e-142 508.4 297 84.8
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 8.2e-142 507.3 303 83.8
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.1e-141 506.9 303 83.8
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.8e-141 506.1 301 82.1
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.8e-141 506.1 303 82.8
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.4e-141 505.8 303 82.8
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 3.1e-141 505.4 303 83.8
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.1e-141 505.0 303 82.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 5.3e-141 504.6 302 81.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 6.9e-141 504.2 303 83.5
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.0e-141 503.8 303 82.2
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.2e-140 503.4 300 82.7
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.5e-140 503.1 302 81.5
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 2.0e-140 502.7 303 83.8
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.6e-140 502.3 299 83.6
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.5e-140 501.5 300 82.3
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 5.9e-140 501.1 301 82.1
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 7.6e-140 500.7 299 81.9
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.6e-140 500.7 321 78.5
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.0e-139 500.4 301 81.1
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.0e-139 500.4 301 81.7
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.3e-139 500.0 303 82.8
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 81.5
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 5.0e-139 498.0 303 79.9
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 5.0e-139 498.0 300 82.0
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 6.5e-139 497.7 303 82.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.4e-138 496.5 303 81.8
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 2.5e-138 495.7 301 80.7
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 9.3e-138 493.8 301 82.4
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 81.2
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 6.1e-137 491.1 303 80.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.3e-136 490.0 303 81.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.3e-136 489.2 300 81.7
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 5.1e-136 488.0 303 80.2
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.5e-135 486.5 302 79.5
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 5.7e-135 484.6 305 79.7
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.7e-135 484.6 299 81.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.8e-134 482.3 303 79.9
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.8e-134 482.3 303 79.5
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 3.7e-134 481.9 303 77.9
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 8.2e-134 480.7 302 79.5
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 8.2e-134 480.7 302 79.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 8.2e-134 480.7 302 79.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.1e-133 480.3 303 79.5
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.4e-133 479.9 303 78.5
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.8e-133 479.6 302 79.5
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 3.1e-133 478.8 300 79.7
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 4.1e-133 478.4 303 79.2
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 6.9e-133 477.6 300 77.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 6.9e-133 477.6 299 77.9
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 9.1e-133 477.2 300 79.0
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 78.2
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 79.2
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.5e-132 474.9 300 77.3
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 5.9e-132 474.6 301 79.7
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 2.2e-131 472.6 303 76.9
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.8e-131 471.9 338 72.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 78.5
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 7.2e-130 467.6 303 77.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 7.2e-130 467.6 309 76.7
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.7e-129 465.7 303 76.2
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 4.6e-129 464.9 242 93.8
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 4.6e-129 464.9 340 70.3
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 6.1e-129 464.5 316 74.4
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 7.9e-129 464.2 303 74.9
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.0e-128 462.2 303 75.2
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 3.0e-128 462.2 303 76.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 8.8e-128 460.7 300 74.7
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.0e-127 459.5 302 75.5
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 2.5e-122 442.6 246 86.6
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 4.2e-122 441.8 259 83.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 2.1e-121 439.5 312 75.0
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.5e-119 433.3 300 73.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.3e-119 432.2 301 74.1
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.0e-116 422.9 294 69.7
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.5e-116 421.8 340 64.4
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 7.7e-116 421.0 302 66.9
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 5.5e-114 414.8 290 70.3
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 8.0e-113 411.0 288 70.5
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 9.7e-111 404.1 303 68.6
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.4e-109 399.4 509 47.0
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.6e-103 379.4 300 66.7
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 8.3e-102 374.4 299 62.5
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 3.1e-101 372.5 305 62.0
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.9e-99 365.9 209 84.7
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.5e-98 363.6 209 83.3
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 8.0e-97 357.8 290 60.0
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.1e-93 345.5 200 86.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.3e-91 340.5 220 77.7
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.0e-88 330.9 242 73.1
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.2e-81 307.4 245 68.2
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 3.5e-76 289.3 279 52.7
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.0e-76 288.5 246 58.9
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.4e-69 267.3 154 87.0
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.3e-51 206.8 273 41.0
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 9.0e-48 194.9 274 39.1
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 7.6e-47 191.8 108 84.3
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 8.4e-46 188.3 173 54.9
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 3.3e-42 176.4 199 54.3
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 5.6e-42 175.6 101 84.2
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.1e-34 151.4 84 83.3
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 6.9e-32 142.1 84 79.8
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 4.1e-24 116.3 87 72.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 2.6e-23 113.6 83 71.1
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 2.2e-22 110.5 234 29.1
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-22 110.2 70 77.1
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 7.2e-21 105.5 63 76.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 2.7e-20 103.6 124 43.5
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 2.7e-20 103.6 86 65.1
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.0e-19 100.1 162 39.5
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 5.1e-19 99.4 121 49.6
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 7.4e-10 68.9 54 68.5
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 3.1e-08 63.5 53 56.6
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.2e-07 61.6 40 72.5
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 1.5e-07 61.2 63 55.6


User provided reference genes

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