Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.1e-120 436.8 248 100.0
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.0e-77 293.1 251 73.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 5.4e-75 285.0 224 71.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 6.2e-71 271.6 222 69.4
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 3.1e-70 269.2 244 63.5
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.6e-69 266.2 201 72.6
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.7e-68 263.5 221 67.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 3.5e-66 255.8 201 69.7
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 3.3e-64 249.2 200 68.0
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 5.6e-64 248.4 220 66.4
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 4.7e-63 245.4 211 66.4
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.1e-63 244.6 219 61.2
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.8e-62 243.4 223 67.3
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.2e-61 240.7 220 64.5
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.5e-61 240.4 221 63.8
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 1.3e-60 237.3 218 64.2
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.2e-60 236.5 220 60.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.9e-60 235.3 213 63.8
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 6.4e-60 235.0 216 64.8
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 2.4e-59 233.0 208 65.9
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.5e-58 229.2 218 62.8
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.5e-58 229.2 216 60.6
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.6e-58 228.8 221 62.4
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.3e-57 226.5 198 65.2
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.0e-57 226.1 215 62.3
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.9e-57 225.7 218 61.9
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.9e-57 225.7 216 61.6
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 8.7e-57 224.6 200 65.5
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.7e-57 224.6 218 61.5
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-56 223.0 215 61.9
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 9.6e-56 221.1 222 62.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 2.1e-55 219.9 222 62.6
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 8.1e-55 218.0 209 60.3
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.4e-54 217.2 194 66.5
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.8e-54 216.9 136 84.6
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.4e-54 216.5 248 59.7
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.1e-54 216.1 197 64.5
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 4.0e-54 215.7 218 59.2
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 5.3e-54 215.3 221 59.3
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.3e-54 215.3 223 57.8
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 6.9e-54 214.9 247 60.3
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.0e-53 213.4 194 66.0
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.2e-52 209.9 220 57.3
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 4.9e-52 208.8 209 58.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 6.4e-52 208.4 223 58.7
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.4e-51 207.2 201 62.7
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 5.4e-51 205.3 223 58.3
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 5.4e-51 205.3 222 56.8
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 9.3e-51 204.5 202 59.9
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 9.3e-51 204.5 215 58.6
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.6e-50 203.8 211 57.3
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.6e-50 203.8 223 57.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 3.5e-50 202.6 209 60.8
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 3.5e-50 202.6 318 44.7
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 6.0e-50 201.8 220 57.7
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.0e-49 201.1 221 61.1
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 5.1e-49 198.7 240 52.5
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 6.6e-49 198.4 201 58.2
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 6.6e-49 198.4 203 62.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.5e-48 197.2 206 58.3
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.5e-48 196.4 220 56.4
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.5e-48 196.4 231 55.8
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 7.3e-48 194.9 220 55.0
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 3.6e-47 192.6 231 56.7
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.8e-46 190.3 248 56.5
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 5.3e-46 188.7 271 48.0
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 5.3e-46 188.7 197 58.9
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 9.0e-46 188.0 215 54.4
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-45 187.2 256 50.0
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-45 187.2 256 49.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.5e-45 187.2 223 57.0
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.0e-45 186.8 256 50.4
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 3.4e-45 186.0 243 49.8
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.2e-44 183.3 229 51.1
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 8.4e-44 181.4 206 55.3
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.9e-43 180.3 194 56.2
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.1e-42 176.8 136 73.5
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 2.1e-42 176.8 190 55.3
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.8e-41 173.7 242 48.8
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 3.0e-41 172.9 217 51.2
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.0e-41 172.9 261 48.3
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 4.3e-40 169.1 197 54.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 9.6e-40 167.9 219 51.1
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 2.8e-39 166.4 252 48.0
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 2.8e-39 166.4 173 58.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.8e-39 166.4 244 48.0
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 3.1e-38 162.9 221 51.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 3.1e-38 162.9 165 59.4
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 2.6e-37 159.8 136 63.2
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 4.5e-37 159.1 206 49.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 6.4e-36 155.2 258 46.1
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.9e-35 153.7 193 49.7
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.5e-35 153.3 178 49.4
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 3.2e-35 152.9 243 45.3
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 9.3e-35 151.4 211 47.4
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.2e-34 151.0 221 48.0
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.6e-34 150.6 263 43.3
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 7.9e-34 148.3 204 49.5
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.0e-33 147.9 212 48.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.3e-33 147.5 166 51.8
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 5.1e-33 145.6 218 46.3
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 6.7e-33 145.2 253 41.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.5e-32 143.3 222 46.4
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.3e-32 142.9 232 42.2
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.3e-32 142.5 217 47.9
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 7.4e-32 141.7 172 52.9
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 9.6e-32 141.4 165 53.3
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-31 141.0 217 46.5
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.6e-31 140.6 206 45.6
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.8e-31 139.8 216 46.8
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-31 139.0 215 46.5
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-30 137.5 214 46.3
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.4e-30 137.5 214 46.3
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-30 136.7 219 46.1
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 5.3e-30 135.6 160 55.6
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 5.3e-30 135.6 220 45.5
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.3e-30 135.6 116 69.0
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.9e-30 135.2 204 44.6
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.6e-29 133.3 178 50.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.3e-28 131.0 150 53.3
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.3e-28 131.0 213 46.0
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.7e-28 130.6 194 44.8
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-28 129.0 221 45.7
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 8.4e-28 128.3 230 44.8
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 3.2e-27 126.3 175 49.1
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 7.1e-27 125.2 169 49.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 7.1e-27 125.2 192 43.8
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 6.7e-25 118.6 247 39.3
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 6.7e-25 118.6 247 39.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.5e-24 117.5 183 46.4
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.1e-22 111.3 221 38.5
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.4e-22 110.2 141 50.4
Dinv09506 Davidia involucrata HOM05D003513 ORTHO05D004660 3.4e-21 106.3 69 75.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 7.7e-21 105.1 145 52.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.0e-20 104.8 158 47.5
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 2.1e-18 97.1 159 47.2
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.1e-18 95.5 113 54.0
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.3e-17 93.6 136 44.1
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 6.7e-17 92.0 177 42.4
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 8.8e-17 91.7 191 40.8
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 8.8e-17 91.7 191 40.8
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-16 90.9 191 41.4
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-15 87.8 73 63.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 4.8e-15 85.9 184 40.8
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.4e-14 84.3 60 68.3
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 2.4e-14 83.6 185 38.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 9.1e-14 81.6 190 41.1
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-13 80.9 182 40.1
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-11 74.3 184 37.5
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-11 73.6 45 77.8
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-11 73.6 45 77.8
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-11 73.6 45 77.8
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-11 73.6 45 77.8
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-10 71.2 43 79.1
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-10 71.2 45 75.6
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.6e-10 70.9 77 54.5
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.7e-10 70.1 48 72.9
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-10 69.7 74 52.7
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.6e-10 69.7 43 76.7
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.9e-09 66.2 42 73.8
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.5e-08 64.3 41 70.7
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 3.3e-08 63.2 149 39.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 9.7e-08 61.6 125 44.8
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 9.7e-08 61.6 42 71.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 2.2e-07 60.5 149 38.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 8.2e-07 58.5 130 38.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.3e-06 55.8 88 45.5


User provided reference genes

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