Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17646 Davidia involucrata HOM05D003748 ORTHO05D004108 2.1e-43 178.7 97 100.0
TAR629G2871 Trochodendron aralioides HOM05D003748 ORTHO05D004108 1.9e-28 129.0 92 75.0
CSS0002953 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 2.7e-22 108.6 65 87.7
SEGI_17758 Sequoiadendron giganteum HOM05D003748 ORTHO05D004108 2.8e-11 72.0 66 56.1
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 1.4e-10 69.7 74 47.3
PGR042G3867 Punica granatum HOM05D003748 ORTHO05D004108 6.9e-10 67.4 86 44.2
Mapoly0036s0083 Marchantia polymorpha HOM05D003748 ORTHO05D004108 9.0e-10 67.0 93 43.0
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 9.0e-10 67.0 86 44.2
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 2.0e-09 65.9 90 45.6
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 3.4e-09 65.1 92 43.5
QL02p033706 Quercus lobata HOM05D003748 ORTHO05D004108 3.4e-09 65.1 70 48.6
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 4.5e-09 64.7 97 42.3
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 4.5e-09 64.7 72 45.8
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 5.9e-09 64.3 90 42.2
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 7.6e-09 63.9 87 40.2
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 1.0e-08 63.5 70 44.3
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 1.3e-08 63.2 86 45.3
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 1.3e-08 63.2 71 46.5
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 1.7e-08 62.8 81 42.0
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 1.7e-08 62.8 85 41.2
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 1.7e-08 62.8 98 38.8
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 2.2e-08 62.4 91 44.0
Solyc06g065370.3 Solanum lycopersicum HOM05D003748 ORTHO05D004108 2.2e-08 62.4 92 43.5
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 2.9e-08 62.0 76 42.1
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 2.9e-08 62.0 90 38.9
ATR0584G219 Amborella trichopoda HOM05D003748 ORTHO05D004108 3.8e-08 61.6 85 47.1
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 3.8e-08 61.6 76 42.1
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 3.8e-08 61.6 90 42.2
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 3.8e-08 61.6 77 46.8
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 5.0e-08 61.2 100 38.0
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 5.0e-08 61.2 100 38.0
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 6.5e-08 60.8 86 40.7
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 6.5e-08 60.8 91 40.7
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 6.5e-08 60.8 71 49.3
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 6.5e-08 60.8 65 49.2
CANSAT56G2356 Cannabis sativa HOM05D003748 ORTHO05D004108 8.5e-08 60.5 75 44.0
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 8.5e-08 60.5 65 47.7
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 8.5e-08 60.5 87 41.4
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 8.5e-08 60.5 86 40.7
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 8.5e-08 60.5 74 44.6
ATR0620G025 Amborella trichopoda HOM05D003748 ORTHO05D004108 1.1e-07 60.1 81 45.7
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 1.1e-07 60.1 76 40.8
Sabra11G0051700 Salix brachista HOM05D000022 ORTHO05D000071 1.1e-07 60.1 63 52.4
Sopen06g023850 Solanum pennellii HOM05D003748 ORTHO05D004108 1.1e-07 60.1 72 43.1
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 1.4e-07 59.7 78 43.6
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.9e-07 59.3 82 40.2
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.9e-07 59.3 71 45.1
FAN14G5726 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.9e-07 59.3 91 41.8
PGSC0003DMG400026076 Solanum tuberosum HOM05D003748 ORTHO05D004108 1.9e-07 59.3 66 48.5
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 2.5e-07 58.9 65 49.2
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 2.5e-07 58.9 76 40.8
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 2.5e-07 58.9 78 43.6
Sed0001630 Sechium edule HOM05D003748 ORTHO05D004108 2.5e-07 58.9 70 44.3
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 3.2e-07 58.5 65 47.7
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 3.2e-07 58.5 64 48.4
Nitab4.5_0002500g0020 Nicotiana tabacum HOM05D003748 ORTHO05D004108 3.2e-07 58.5 106 40.6
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 3.2e-07 58.5 80 38.8
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 3.2e-07 58.5 97 36.1
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 3.2e-07 58.5 86 45.3
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 3.2e-07 58.5 91 40.7
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 3.2e-07 58.5 86 43.0
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 3.2e-07 58.5 84 38.1
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 4.2e-07 58.2 65 47.7
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 4.2e-07 58.2 91 38.5
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 4.2e-07 58.2 88 38.6
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 4.2e-07 58.2 88 38.6
ClCG09G010610 Citrullus lanatus HOM05D003748 ORTHO05D004108 4.2e-07 58.2 93 37.6
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 4.2e-07 58.2 66 47.0
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 4.2e-07 58.2 71 40.8
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 4.2e-07 58.2 87 43.7
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 4.2e-07 58.2 80 38.8
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 4.2e-07 58.2 91 45.1
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 4.2e-07 58.2 66 50.0
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 5.5e-07 57.8 92 37.0
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 5.5e-07 57.8 92 37.0
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 5.5e-07 57.8 92 37.0
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 5.5e-07 57.8 66 42.4
CDE06G2501 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 5.5e-07 57.8 88 37.5
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 5.5e-07 57.8 91 40.7
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 5.5e-07 57.8 94 38.3
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 5.5e-07 57.8 100 42.0
HPP92_006842 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.5e-07 57.8 72 43.1
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 7.2e-07 57.4 64 45.3
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 7.2e-07 57.4 90 41.1
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 7.2e-07 57.4 93 37.6
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 7.2e-07 57.4 85 41.2
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 7.2e-07 57.4 97 39.2
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 7.2e-07 57.4 89 42.7
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 7.2e-07 57.4 67 46.3
SGA_v2.0_scaffold25G11069 Striga asiatica HOM05D003748 ORTHO05D004108 7.2e-07 57.4 84 41.7
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 7.2e-07 57.4 66 45.5
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 9.3e-07 57.0 66 45.5
SGA_v2.0_scaffold149G36586 Striga asiatica HOM05D003748 ORTHO05D004108 9.3e-07 57.0 89 40.4
AUR62022695 Chenopodium quinoa HOM05D003748 ORTHO05D004108 1.2e-06 56.6 74 40.5
MELO3C024124.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.2e-06 56.6 64 43.8
CsaV3_7G024420 Cucumis sativus L. HOM05D003748 ORTHO05D004108 1.2e-06 56.6 64 43.8
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 1.2e-06 56.6 101 37.6
HanXRQChr05g0150061 Helianthus annuus HOM05D003748 ORTHO05D004108 1.2e-06 56.6 75 42.7
HanXRQChr05g0150261 Helianthus annuus HOM05D003748 ORTHO05D004108 1.2e-06 56.6 75 42.7
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 1.2e-06 56.6 97 37.1
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 1.2e-06 56.6 69 40.6
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 1.2e-06 56.6 90 36.7
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 1.6e-06 56.2 70 41.4
AUR62004641 Chenopodium quinoa HOM05D003748 ORTHO05D004108 1.6e-06 56.2 71 42.3
MELO3C024123.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.6e-06 56.2 99 39.4
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.6e-06 56.2 91 39.6
Hund16797 Selenicereus undatus HOM05D003748 ORTHO05D004108 1.6e-06 56.2 66 47.0
CSS0005693 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 2.1e-06 55.8 71 40.8
CDE08G0273 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 2.1e-06 55.8 87 37.9
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 2.1e-06 55.8 64 43.8
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 2.1e-06 55.8 76 39.5
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 2.7e-06 55.5 89 39.3
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 2.7e-06 55.5 76 39.5
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 2.7e-06 55.5 64 46.9
MELO3C028637.2 Cucumis melo HOM05D003748 ORTHO05D004108 2.7e-06 55.5 57 49.1
FAN02G1714 Fragaria x ananassa HOM05D001133 ORTHO05D004108 2.7e-06 55.5 84 42.9
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 2.7e-06 55.5 66 43.9
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 2.7e-06 55.5 79 40.5
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 3.6e-06 55.1 66 42.4
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 3.6e-06 55.1 67 44.8
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.6e-06 55.1 65 44.6
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.6e-06 55.1 93 40.9
Ciclev10002870m.g Citrus clementina HOM05D003748 ORTHO05D004108 4.6e-06 54.7 85 36.5
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 4.6e-06 54.7 66 43.9
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 4.6e-06 54.7 92 39.1
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 4.6e-06 54.7 83 43.4
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 4.6e-06 54.7 91 35.2
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 6.1e-06 54.3 86 37.2
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 6.1e-06 54.3 94 35.1
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 6.1e-06 54.3 67 44.8
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 6.1e-06 54.3 64 42.2
Sabra10G0094400 Salix brachista HOM05D003748 ORTHO05D004108 6.1e-06 54.3 65 50.8
Sabra19G0072000 Salix brachista HOM05D003748 ORTHO05D004108 6.1e-06 54.3 83 42.2
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 6.1e-06 54.3 90 34.4
arahy.Tifrunner.gnm1.ann1.14DQKS Arachis hypogaea HOM05D003748 ORTHO05D004108 7.9e-06 53.9 65 46.2
CAN.G303.17 Capsicum annuum HOM05D000015 ORTHO05D001173 7.9e-06 53.9 97 36.1
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 7.9e-06 53.9 86 38.4
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 7.9e-06 53.9 72 41.7
Haze_22521 Corylus avellana HOM05D003748 ORTHO05D004108 7.9e-06 53.9 88 37.5
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 7.9e-06 53.9 101 35.6
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 7.9e-06 53.9 65 43.1
SMO352G0015 Selaginella moellendorffii HOM05D003748 ORTHO05D004108 7.9e-06 53.9 69 44.9
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 7.9e-06 53.9 64 40.6
Zm00001eb306170 Zea mays HOM05D003748 ORTHO05D004108 7.9e-06 53.9 104 41.3


User provided reference genes

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