Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17635 Davidia involucrata HOM05D000187 ORTHO05D000926 4.3e-81 305.1 212 100.0
Dinv17628 Davidia involucrata HOM05D000187 ORTHO05D000926 6.7e-42 174.9 157 68.8
MD00G1145000 Malus domestica HOM05D000187 ORTHO05D000926 1.7e-40 170.2 158 61.4
Actinidia13717 Actinidia chinensis HOM05D000187 ORTHO05D000926 3.7e-40 169.1 160 65.6
Atru.chr11.1136 Acer truncatum HOM05D000187 ORTHO05D000926 8.2e-40 167.9 157 63.1
CSS0049850 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000926 1.4e-39 167.2 150 72.7
Manes.11G102000 Manihot esculenta HOM05D000187 ORTHO05D000926 5.3e-39 165.2 155 65.8
Prupe.7G271700 Prunus persica HOM05D000187 ORTHO05D000926 2.0e-38 163.3 155 60.6
Haze_11773 Corylus avellana HOM05D000187 ORTHO05D000926 2.6e-38 162.9 160 62.5
vmacro08835 Vaccinium macrocarpon HOM05D000187 ORTHO05D000926 3.8e-37 159.1 162 64.8
FAN28G0400 Fragaria x ananassa HOM05D000187 ORTHO05D000926 1.1e-36 157.5 154 68.8
Duzib052G0316 Durio zibethinus HOM05D000187 ORTHO05D000926 1.5e-36 157.1 168 57.1
CiPaw.05G170700 Carya illinoinensis HOM05D000187 ORTHO05D000926 4.2e-36 155.6 152 61.2
FvH4_1g00010 Fragaria vesca HOM05D000187 ORTHO05D000926 4.2e-36 155.6 154 68.2
Thecc.02G157600 Theobroma cacao HOM05D000187 ORTHO05D000926 9.4e-36 154.5 161 57.1
GSVIVG01026184001 Vitis vinifera HOM05D000187 ORTHO05D000926 1.2e-35 154.1 162 56.8
CSS0014041 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000926 1.6e-35 153.7 157 68.8
Hma1.2p1_0044F.1_g025990 Hydrangea macrophylla HOM05D000187 ORTHO05D000926 2.1e-35 153.3 161 66.5
Actinidia38419 Actinidia chinensis HOM05D000187 ORTHO05D000926 4.7e-35 152.1 155 66.5
RcHm_v2.0_Chr2g0084221 Rosa chinensis HOM05D000187 ORTHO05D000926 1.4e-34 150.6 154 68.2
CsaV3_5G006070 Cucumis sativus L. HOM05D000187 ORTHO05D000926 1.8e-34 150.2 154 62.3
Dinv11728 Davidia involucrata HOM05D000187 ORTHO05D000926 1.8e-34 150.2 121 76.0
QL03p045866 Quercus lobata HOM05D000187 ORTHO05D000926 1.8e-34 150.2 158 63.3
Glyma.10G284900 Glycine max HOM05D000187 ORTHO05D000926 4.0e-34 149.1 158 65.8
MD15G1141500 Malus domestica HOM05D000187 ORTHO05D000926 4.0e-34 149.1 159 65.4
Sopen02g002340 Solanum pennellii HOM05D000187 ORTHO05D000926 1.1e-33 147.5 150 60.0
Phvul.007G015800 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 1.5e-33 147.1 160 61.9
VMungo0720G1668 Vigna mungo HOM05D000187 ORTHO05D000926 2.6e-33 146.4 159 60.4
Glyma.20G104300 Glycine max HOM05D000187 ORTHO05D000926 3.3e-33 146.0 158 64.6
TPR.G4099 Trifolium pratense HOM05D000187 ORTHO05D000926 3.3e-33 146.0 167 58.7
Gohir.A01G012500 Gossypium hirsutum HOM05D000187 ORTHO05D000926 4.4e-33 145.6 161 58.4
CANSAT78G2433 Cannabis sativa HOM05D000187 ORTHO05D000926 7.5e-33 144.8 175 54.3
Psat6g233200 Pisum sativum HOM05D000187 ORTHO05D000926 7.5e-33 144.8 168 57.1
MELO3C011752.2 Cucumis melo HOM05D000187 ORTHO05D000926 1.3e-32 144.1 152 62.5
PGR044G2289 Punica granatum HOM05D000187 ORTHO05D000926 1.3e-32 144.1 161 53.4
CiPaw.06G061700 Carya illinoinensis HOM05D000187 ORTHO05D000926 2.2e-32 143.3 162 56.8
Duzib132G0432 Durio zibethinus HOM05D000187 ORTHO05D000926 2.2e-32 143.3 170 55.9
Lsat_1_v5_gn_4_64601 Lactuca sativa HOM05D000187 ORTHO05D000926 2.2e-32 143.3 150 55.3
ClCG02G014100 Citrullus lanatus HOM05D000187 ORTHO05D000926 3.7e-32 142.5 152 61.8
Cc11_g03510 Coffea canephora HOM05D000187 ORTHO05D000926 3.1e-31 139.4 154 64.3
Lj5g0016641 Lotus japonicus HOM05D000187 ORTHO05D000926 5.3e-31 138.7 151 58.3
Nitab4.5_0000661g0030 Nicotiana tabacum HOM05D000187 ORTHO05D000926 5.3e-31 138.7 153 65.4
Cpa.g.sc1773.1 Carica papaya HOM05D000187 ORTHO05D000926 7.0e-31 138.3 143 58.7
Sed0017683 Sechium edule HOM05D000187 ORTHO05D000926 9.1e-31 137.9 159 58.5
Potri.005G090800 Populus trichocarpa HOM05D000187 ORTHO05D000926 1.6e-30 137.1 144 64.6
Oeu006341.1 Olea europaea HOM05D000187 ORTHO05D000926 2.0e-30 136.7 160 56.2
Potri.007G073200 Populus trichocarpa HOM05D000187 ORTHO05D000926 2.0e-30 136.7 157 59.2
Gohir.D01G013700 Gossypium hirsutum HOM05D000187 ORTHO05D000926 2.7e-30 136.3 160 60.6
Gorai.002G015500 Gossypium raimondii HOM05D000187 ORTHO05D000926 2.7e-30 136.3 160 60.6
Solyc02g005480.4 Solanum lycopersicum HOM05D000187 ORTHO05D000926 2.7e-30 136.3 152 64.5
MBI09_g00987_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 4.5e-30 135.6 146 56.2
arahy.Tifrunner.gnm1.ann1.21431W Arachis hypogaea HOM05D000187 ORTHO05D000926 1.3e-29 134.0 167 51.5
Rhsim04G0130800 Rhododendron simsii HOM05D000187 ORTHO05D000926 3.8e-29 132.5 218 46.8
TAR371G0805 Trochodendron aralioides HOM05D000187 ORTHO05D000926 3.8e-29 132.5 156 53.8
Ciclev10032094m.g Citrus clementina HOM05D000187 ORTHO05D000926 6.5e-29 131.7 164 61.0
Gohir.A03G165500 Gossypium hirsutum HOM05D000187 ORTHO05D000926 8.5e-29 131.3 171 58.5
HanXRQChr05g0139681 Helianthus annuus HOM05D000187 ORTHO05D000926 1.1e-28 131.0 149 53.7
TAR629G3309 Trochodendron aralioides HOM05D000187 ORTHO05D000926 1.1e-28 131.0 147 60.5
Sabra07G0061700 Salix brachista HOM05D000187 ORTHO05D000926 2.5e-28 129.8 157 50.3
unitig_699.g19552 Utricularia gibba HOM05D000187 ORTHO05D000926 3.2e-28 129.4 142 52.8
Eucgr.G02582 Eucalyptus grandis HOM05D000187 ORTHO05D000926 4.2e-28 129.0 149 51.7
TAR371G1270 Trochodendron aralioides HOM05D000187 ORTHO05D000926 7.2e-28 128.3 156 53.2
Migut.E00691 Erythranthe guttata HOM05D000187 ORTHO05D000926 1.2e-27 127.5 134 58.2
Peaxi162Scf00334g00210 Petunia axillaris HOM05D000187 ORTHO05D000926 1.2e-27 127.5 144 61.1
Lalb_Chr06g0163871 Lupinus albus HOM05D000187 ORTHO05D000926 2.7e-27 126.3 173 53.2
Nitab4.5_0004967g0020 Nicotiana tabacum HOM05D000187 ORTHO05D000926 2.7e-27 126.3 155 56.1
Gohir.D02G188700 Gossypium hirsutum HOM05D000187 ORTHO05D000926 3.6e-27 125.9 171 58.5
Gorai.005G211500 Gossypium raimondii HOM05D000187 ORTHO05D000926 3.6e-27 125.9 171 58.5
unitig_27.g25280 Utricularia gibba HOM05D000187 ORTHO05D000926 3.6e-27 125.9 136 51.5
TWI53G1725 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 6.1e-27 125.2 148 58.8
Sc06g0006750 Simmondsia chinensis HOM05D000187 ORTHO05D000926 6.8e-26 121.7 182 50.5
THA.LOC104815235 Tarenaya hassleriana HOM05D000187 ORTHO05D000926 6.8e-26 121.7 157 53.5
Medtr1g114240 Medicago truncatula HOM05D000187 ORTHO05D000926 8.8e-26 121.3 169 56.8
Cfa008758 Carpinus fangiana HOM05D000187 ORTHO05D000926 1.5e-25 120.6 145 51.7
TWI74G0652 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 1.5e-25 120.6 128 57.0
AL3G33470 Arabidopsis lyrata HOM05D000187 ORTHO05D000926 4.4e-25 119.0 154 48.7
Oeu027919.1 Olea europaea HOM05D000187 ORTHO05D000926 4.4e-25 119.0 169 53.3
AT3G19910 Arabidopsis thaliana HOM05D000187 ORTHO05D000926 5.7e-25 118.6 163 44.8
MSTRG.13682 Avicennia marina HOM05D000187 ORTHO05D000926 1.3e-24 117.5 161 51.6
Carub.0003s1981 Capsella rubella HOM05D000187 ORTHO05D000926 1.8e-23 113.6 150 47.3
PGR044G0989 Punica granatum HOM05D000187 ORTHO05D000926 1.8e-23 113.6 131 51.1
BraA01t03567Z Brassica rapa HOM05D000187 ORTHO05D000926 2.4e-23 113.2 144 52.8
Ah.01g012510 Amaranthus hybridus HOM05D000187 ORTHO05D000926 5.4e-23 112.1 174 42.5
C05p44720 Brassica napus HOM05D000187 ORTHO05D000926 7.0e-23 111.7 148 47.3
CARHR095440 Cardamine hirsuta HOM05D000187 ORTHO05D000926 7.0e-23 111.7 162 48.1
Thhalv10021098m.g Eutrema salsugineum HOM05D000187 ORTHO05D000926 9.1e-23 111.3 160 48.1
SGA_v2.0_scaffold256G45634 Striga asiatica HOM05D000187 ORTHO05D000926 1.6e-22 110.5 141 57.4
Sp3g17930 Schrenkiella parvula HOM05D000187 ORTHO05D000926 2.0e-22 110.2 155 56.1
A01p34840 Brassica napus HOM05D000187 ORTHO05D000926 3.5e-22 109.4 144 50.7
Hund08620 Selenicereus undatus HOM05D000187 ORTHO05D000926 4.5e-22 109.0 180 42.2
Aa31LG8G6730 Aethionema arabicum HOM05D000187 ORTHO05D000926 5.9e-22 108.6 155 45.2
Lj6C717T11 Lonicera japonica HOM05D000187 ORTHO05D000926 5.9e-22 108.6 122 54.1
EL10Ac9g22972 Beta vulgaris HOM05D000187 ORTHO05D000926 2.2e-21 106.7 165 51.5
BcaB06g26060 Brassica carinata HOM05D000187 ORTHO05D000926 2.9e-21 106.3 145 46.2
PSO541G3835 Papaver somniferum HOM05D000187 ORTHO05D000926 1.9e-20 103.6 161 44.1
PSO675G0594 Papaver somniferum HOM05D000187 ORTHO05D000926 3.2e-20 102.8 164 43.9
MSTRG.2064 Avicennia marina HOM05D000187 ORTHO05D000926 4.2e-20 102.4 137 58.4
A05p29220 Brassica napus HOM05D000187 ORTHO05D000926 4.2e-20 102.4 156 46.2
ATR0810G020 Amborella trichopoda HOM05D000187 ORTHO05D000926 7.2e-20 101.7 165 42.4
BcaC09g48948 Brassica carinata HOM05D000187 ORTHO05D000926 7.2e-20 101.7 153 47.1
C01p44240 Brassica napus HOM05D000187 ORTHO05D000926 7.2e-20 101.7 153 47.1
BolC1t04384H Brassica oleracea HOM05D000187 ORTHO05D000926 7.2e-20 101.7 153 47.1
BcaC05g28395 Brassica carinata HOM05D000187 ORTHO05D000926 4.7e-19 99.0 148 43.9
BolC5t33199H Brassica oleracea HOM05D000187 ORTHO05D000926 4.7e-19 99.0 148 43.9
BraA05t21806Z Brassica rapa HOM05D000187 ORTHO05D000926 4.7e-19 99.0 148 49.3
CDE02G0893 Ceratophyllum demersum HOM05D000187 ORTHO05D000926 4.7e-19 99.0 153 46.4
Sed0013552 Sechium edule HOM05D000187 ORTHO05D000926 6.1e-19 98.6 142 52.8
CDE04G3378 Ceratophyllum demersum HOM05D000187 ORTHO05D000926 3.0e-18 96.3 149 44.3
Aqoxy2G00056 Aquilegia oxysepala HOM05D000187 ORTHO05D000926 1.2e-17 94.4 161 45.3
Mapoly0148s0003 Marchantia polymorpha HOM05D000187 ORTHO05D000926 1.7e-16 90.5 140 42.9
HPP92_025852 Vanilla planifolia HOM05D000187 ORTHO05D000926 1.7e-16 90.5 150 44.0
AUR62032960 Chenopodium quinoa HOM05D000187 ORTHO05D000926 2.8e-16 89.7 144 43.1
Os09g0535100 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000926 5.4e-15 85.5 165 49.7
Zm00001eb103610 Zea mays HOM05D000187 ORTHO05D000926 5.4e-15 85.5 157 50.3
ECA234G0105 Erigeron canadensis HOM05D000187 ORTHO05D000926 2.0e-14 83.6 154 44.2
Pp3c5_17300 Physcomitrium patens HOM05D000187 ORTHO05D000926 7.7e-14 81.6 140 46.4
AagrBONN_evm.TU.Sc2ySwM_368.3308 Anthoceros agrestis HOM05D000187 ORTHO05D000926 6.6e-13 78.6 164 45.1
Zm00001eb319790 Zea mays HOM05D000187 ORTHO05D000926 6.6e-13 78.6 160 48.1
MBI14_g22291_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 4.3e-12 75.9 115 52.2
Ca_11221_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000926 1.6e-11 73.9 64 65.6
FAN08G0081 Fragaria x ananassa HOM05D000187 ORTHO05D000926 2.8e-11 73.2 49 75.5
Os08g0548300 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000926 2.8e-11 73.2 139 49.6
arahy.Tifrunner.gnm1.ann1.4G0ENY Arachis hypogaea HOM05D000187 ORTHO05D000926 4.7e-11 72.4 145 39.3
COL.COLO4_33056 Corchorus olitorius HOM05D000187 ORTHO05D000926 4.4e-09 65.9 44 77.3
CBR_g18643 Chara braunii HOM05D000187 ORTHO05D000926 7.5e-09 65.1 171 34.5
FAN25G2650 Fragaria x ananassa HOM05D000187 ORTHO05D000926 2.9e-08 63.2 53 66.0
Sabra05G0074900 Salix brachista HOM05D000187 ORTHO05D000926 1.8e-07 60.5 53 58.5
SEGI_34519 Sequoiadendron giganteum HOM05D000187 ORTHO05D000926 2.4e-07 60.1 118 39.0
HPP92_027500 Vanilla planifolia HOM05D000187 ORTHO05D000926 3.2e-07 59.7 73 46.6
DCAR_030709 Daucus carota HOM05D000187 ORTHO05D000926 4.6e-06 55.8 83 43.4


User provided reference genes

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