Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.9e-133 479.2 240 100.0
FAN07G2800 Fragaria x ananassa HOM05D001910 ORTHO05D003653 5.5e-32 142.1 152 57.2
FvH4_4g37030 Fragaria vesca HOM05D001910 ORTHO05D028341 1.3e-28 131.0 150 55.3
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 6.9e-27 125.2 67 86.6
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.5e-26 124.0 67 86.6
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 5.9e-26 122.1 67 85.1
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.3e-25 120.9 67 83.6
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.3e-25 120.9 67 83.6
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.7e-25 120.6 67 85.1
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 6.5e-25 118.6 67 80.6
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 6.5e-25 118.6 67 80.6
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 8.5e-25 118.2 67 82.1
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.1e-24 117.9 67 85.1
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.1e-24 117.9 67 83.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.4e-24 117.5 67 85.1
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.4e-24 117.5 67 82.1
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.4e-24 117.5 67 82.1
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.4e-24 117.5 67 82.1
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.9e-24 117.1 69 84.1
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 4.2e-24 115.9 67 83.6
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 5.5e-24 115.5 67 80.6
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 9.3e-24 114.8 67 80.6
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.2e-23 114.4 67 79.1
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.6e-23 114.0 67 82.1
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.6e-23 114.0 67 80.6
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.6e-23 114.0 68 83.8
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 2.7e-23 113.2 68 80.9
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 3.6e-23 112.8 67 79.1
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 4.6e-23 112.5 67 82.1
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 4.6e-23 112.5 67 80.6
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 4.6e-23 112.5 68 83.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 6.1e-23 112.1 67 79.1
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 6.1e-23 112.1 67 80.6
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 6.1e-23 112.1 67 80.6
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 6.1e-23 112.1 70 75.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.0e-22 111.3 67 74.6
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.0e-22 111.3 67 76.1
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.0e-22 111.3 67 80.6
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.0e-22 111.3 67 77.6
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.3e-22 110.9 67 80.6
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.3e-22 110.9 68 80.9
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.8e-22 110.5 68 79.4
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.3e-22 110.2 67 79.1
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.3e-22 110.2 68 80.9
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 3.9e-22 109.4 67 79.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 5.1e-22 109.0 67 77.6
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.1e-22 109.0 67 77.6
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 5.1e-22 109.0 67 77.6
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 5.1e-22 109.0 67 77.6
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 5.1e-22 109.0 67 76.1
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 6.7e-22 108.6 67 76.1
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 8.7e-22 108.2 67 79.1
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 8.7e-22 108.2 67 79.1
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 8.7e-22 108.2 67 77.6
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.7e-22 108.2 67 77.6
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.1e-21 107.8 67 73.1
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.5e-21 107.5 67 79.1
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.9e-21 107.1 67 79.1
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.9e-21 107.1 67 76.1
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.9e-21 107.1 67 76.1
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.9e-21 107.1 67 73.1
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 1.9e-21 107.1 67 77.6
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.5e-21 106.7 67 77.6
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 2.5e-21 106.7 67 77.6
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 2.5e-21 106.7 67 74.6
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 3.3e-21 106.3 67 76.1
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 3.3e-21 106.3 69 73.9
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.3e-21 106.3 67 74.6
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 3.3e-21 106.3 67 73.1
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 4.3e-21 105.9 67 77.6
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 4.3e-21 105.9 68 75.0
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.3e-21 105.9 67 77.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 4.3e-21 105.9 67 77.6
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.7e-21 105.5 67 74.6
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.7e-21 105.5 67 77.6
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 7.4e-21 105.1 68 76.5
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 7.4e-21 105.1 67 76.1
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 7.4e-21 105.1 67 74.6
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.4e-21 105.1 67 76.1
Zm00001eb076790 Zea mays HOM05D001910 ORTHO05D028341 7.4e-21 105.1 168 42.9
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 9.7e-21 104.8 67 73.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 9.7e-21 104.8 68 73.5
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 2.2e-20 103.6 67 74.6
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.2e-20 103.6 68 73.5
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 2.2e-20 103.6 67 73.1
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.8e-20 103.2 67 68.7
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 2.8e-20 103.2 67 73.1
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 3.7e-20 102.8 67 73.1
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.8e-20 102.4 67 71.6
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.3e-20 102.1 67 76.1
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 8.2e-20 101.7 68 73.5
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.1e-19 101.3 67 73.1
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.1e-19 101.3 67 68.7
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.8e-19 100.5 64 71.9
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 6.9e-19 98.6 67 73.1
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.5e-18 97.4 68 70.6
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-18 97.1 69 72.5
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-18 97.1 69 72.5
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.0e-17 94.7 68 66.2
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.3e-17 94.4 64 73.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.7e-17 94.0 67 64.2
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 1.7e-17 94.0 64 71.9
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 3.8e-17 92.8 64 68.8
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 3.8e-17 92.8 64 68.8
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 3.8e-17 92.8 64 68.8
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 3.8e-17 92.8 64 68.8
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 8.5e-17 91.7 64 68.8
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.5e-17 91.7 64 71.9
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 8.5e-17 91.7 64 71.9
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.1e-16 91.3 61 72.1
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 1.4e-16 90.9 68 63.2
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.2e-16 89.7 63 71.4
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.2e-16 89.4 61 70.5
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 9.4e-16 88.2 69 66.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 9.4e-16 88.2 68 64.7
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-15 87.8 63 69.8
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 2.7e-15 86.7 64 65.6
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.6e-15 86.3 46 84.8
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.6e-15 86.3 62 69.4
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 7.9e-15 85.1 46 82.6
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 7.9e-15 85.1 64 62.5
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 7.9e-15 85.1 64 65.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.8e-14 84.0 64 70.3
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 2.3e-14 83.6 61 67.2
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 3.0e-14 83.2 67 61.2
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 5.1e-14 82.4 55 70.9
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 6.7e-14 82.0 63 66.7
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 6.7e-14 82.0 62 67.7
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 6.7e-14 82.0 68 63.2
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 8.8e-14 81.6 62 69.4
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.1e-13 81.3 54 75.9
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.5e-13 80.9 71 60.6
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 3.3e-13 79.7 45 80.0
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.3e-13 79.7 65 63.1
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.3e-12 77.8 48 77.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.7e-12 77.4 37 94.6
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.7e-12 77.4 37 94.6
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.3e-12 75.5 67 61.2
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.1e-11 74.7 66 57.6
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.1e-11 74.7 58 60.3
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.4e-11 73.6 67 55.2
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 4.1e-11 72.8 40 80.0
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 6.9e-11 72.0 48 72.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 6.9e-11 72.0 48 72.9
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.9e-11 72.0 53 67.9
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.5e-10 70.9 47 72.3
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 2.6e-10 70.1 46 73.9
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.6e-10 70.1 68 55.9
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.8e-09 66.2 60 55.0
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 3.8e-09 66.2 44 68.2
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.0e-09 65.9 50 66.0
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.2e-08 63.2 68 50.0
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.2e-08 63.2 68 50.0
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 4.7e-07 59.3 45 60.0
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 6.7e-06 55.5 44 56.8


User provided reference genes

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