Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1168.3 568 100.0
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 0.0e+00 1104.7 568 92.4
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 0.0e+00 1100.1 568 91.9
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 0.0e+00 1099.0 568 92.1
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 0.0e+00 1099.0 568 92.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 0.0e+00 1094.3 564 91.5
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 0.0e+00 1094.0 568 91.5
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 0.0e+00 1093.6 568 91.7
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1093.2 568 91.4
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 0.0e+00 1093.2 568 91.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1089.7 568 91.2
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1085.5 557 92.6
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 0.0e+00 1084.7 571 91.6
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1082.8 561 91.6
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 0.0e+00 1081.6 563 91.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 0.0e+00 1080.5 563 91.7
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 0.0e+00 1078.2 568 91.0
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 0.0e+00 1078.2 567 89.9
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1076.6 561 91.3
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 0.0e+00 1076.6 563 91.1
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 0.0e+00 1075.5 568 90.5
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 0.0e+00 1075.5 563 91.1
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.9e-312 1074.3 568 90.5
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.2e-311 1072.4 568 90.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.6e-311 1072.0 568 89.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.6e-311 1072.0 568 90.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 4.7e-311 1070.5 568 89.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 7.8e-311 1069.7 568 89.8
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 7.8e-311 1069.7 568 90.7
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.0e-310 1069.3 567 89.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.0e-310 1067.8 568 90.3
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 568 89.8
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 567 89.2
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 565 89.4
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.9e-309 1065.1 568 88.6
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.5e-309 1064.7 561 89.8
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.5e-309 1064.7 563 90.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 5.5e-309 1063.5 567 89.2
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 9.5e-309 1062.8 561 90.2
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 573 89.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.1e-308 1060.1 568 89.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.3e-307 1058.1 561 89.5
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.3e-307 1058.1 568 88.4
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 568 88.7
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 568 88.2
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.2e-306 1055.8 573 88.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.4e-306 1054.3 568 87.5
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.5e-306 1053.1 568 88.4
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.5e-306 1053.1 568 88.4
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 568 89.3
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 565 86.9
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 5.4e-304 1047.0 568 87.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 563 87.7
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 563 87.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 7.8e-303 1043.1 568 87.0
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 7.8e-303 1043.1 563 88.3
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 563 87.9
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 563 87.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 5.0e-302 1040.4 563 87.9
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 566 88.2
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 562 87.2
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 7.3e-301 1036.6 561 88.1
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.0e-299 1032.7 565 84.8
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 3.0e-299 1031.2 568 87.3
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 6.8e-299 1030.0 563 87.6
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 565 85.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 565 87.1
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 565 84.1
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 569 85.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 571 85.3
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 556 87.9
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 563 86.5
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 5.4e-296 1020.4 550 87.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 564 86.9
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 557 88.2
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 565 86.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 552 86.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 551 86.9
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 564 86.7
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 9.5e-293 1009.6 568 84.7
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 561 84.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 570 84.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 567 84.8
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.3e-289 999.2 534 87.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.7e-289 998.8 567 84.5
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.1e-288 996.1 564 84.6
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 84.4
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 84.4
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 84.4
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.4e-288 995.0 568 82.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.4e-288 995.0 565 83.9
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 84.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 84.2
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 2.0e-287 991.9 564 84.4
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.5e-287 991.1 568 81.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-286 989.2 564 83.7
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-286 988.4 564 83.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 2.3e-286 988.4 564 83.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 550 84.9
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 8.6e-286 986.5 564 83.3
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-285 986.1 564 83.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.5e-285 984.9 564 83.2
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.3e-285 984.2 549 84.5
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.6e-284 982.2 564 83.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 82.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.1e-284 979.9 549 84.0
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 82.8
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 82.8
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 82.8
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 82.8
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 82.6
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 81.9
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 82.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 6.4e-281 970.3 568 80.3
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 5.4e-280 967.2 562 83.3
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 9.2e-280 966.5 562 82.9
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.8e-279 963.4 564 80.5
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 81.4
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 80.7
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.6e-276 955.7 568 79.6
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.4e-275 951.8 563 82.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 4.6e-271 937.6 571 77.6
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 6.0e-271 937.2 565 78.2
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.1e-269 932.9 570 78.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.5e-269 932.6 571 76.7
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.2e-265 918.7 568 76.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 9.3e-264 913.3 524 82.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-263 912.5 564 78.5
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.6e-263 911.0 574 75.1
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.6e-260 902.5 567 75.1
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.5e-258 894.4 564 73.8
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 6.4e-257 890.6 557 79.5
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.3e-254 882.9 565 74.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.3e-254 882.1 562 75.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.2e-250 869.8 569 74.3
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 4.9e-249 864.4 568 74.1
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.6e-247 857.8 565 72.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 7.4e-245 850.5 469 84.2
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.6e-239 831.2 564 70.2
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.2e-226 790.0 418 90.0
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.4e-221 771.5 563 68.7
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 8.8e-214 747.3 567 66.5
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.9e-209 732.3 425 80.7
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.2e-190 668.3 373 82.3
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 5.2e-182 641.7 541 56.7
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.6e-176 621.7 417 74.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.6e-170 602.1 329 83.3
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.8e-166 590.1 523 53.5
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 8.9e-166 587.8 488 55.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 7.5e-165 584.7 292 91.1
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 8.1e-151 538.1 418 60.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-143 513.8 567 51.1
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.0e-141 506.9 568 50.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.9e-131 473.8 318 72.0
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.1e-129 465.7 468 55.1
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-87 327.8 549 38.8
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.8e-87 326.2 213 74.2
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 7.2e-83 312.4 492 36.4
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 5.6e-67 259.6 197 64.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 6.1e-66 256.1 197 62.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-62 244.6 166 69.3
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.7e-53 214.2 132 78.8
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.2e-50 203.0 133 77.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 9.9e-48 195.7 128 77.3
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-44 184.9 166 61.4
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.0e-44 184.1 128 68.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.6e-44 183.0 166 61.4
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-43 182.2 166 61.4
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-42 178.7 166 60.8
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.1e-38 165.6 322 32.6
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 6.9e-33 146.4 495 26.9
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.9e-31 141.0 95 70.5
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.2e-30 137.5 87 72.4
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 6.0e-29 133.3 85 67.1
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-27 128.3 213 39.4
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.9e-27 128.3 76 72.4
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 4.6e-21 107.1 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-20 105.9 166 42.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 2.8e-18 97.8 103 46.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.3e-10 72.4 46 65.2
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 8.4e-07 59.7 72 54.2


User provided reference genes

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