Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 1.7e-232 808.9 393 100.0
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.9e-162 576.2 398 74.4
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.9e-159 566.2 407 72.5
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 6.2e-158 561.2 388 73.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 8.1e-158 560.8 376 74.5
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.0e-157 558.5 394 72.6
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.6e-156 554.3 370 73.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 7.6e-156 554.3 326 83.7
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 7.6e-156 554.3 337 81.3
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 9.9e-156 553.9 343 79.0
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.7e-155 553.1 334 81.1
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.2e-155 552.7 370 73.5
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.2e-155 552.7 395 70.6
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 4.9e-155 551.6 390 73.8
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.9e-155 551.6 343 78.7
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.1e-154 550.4 397 70.0
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.9e-154 549.7 343 78.7
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 4.1e-154 548.5 398 71.4
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 5.4e-154 548.1 326 83.1
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 5.4e-154 548.1 399 70.9
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.6e-153 546.6 348 76.4
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.1e-153 546.2 396 71.7
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.7e-153 545.8 401 71.1
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 4.6e-153 545.0 395 70.6
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 7.8e-153 544.3 314 82.2
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 7.8e-153 544.3 361 73.7
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 6.6e-152 541.2 388 71.6
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 8.6e-152 540.8 378 70.9
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.5e-151 540.0 397 70.0
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.5e-151 539.3 350 75.7
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 5.6e-151 538.1 393 69.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 7.3e-151 537.7 395 69.6
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.2e-150 537.0 285 88.4
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.1e-150 536.2 396 68.7
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.1e-150 536.2 392 69.4
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 8.1e-150 534.3 405 69.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 8.1e-150 534.3 392 69.6
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 5.2e-149 531.6 394 68.5
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 8.9e-149 530.8 290 86.2
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.2e-148 530.4 393 69.7
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 2.6e-148 529.3 385 69.9
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 5.8e-148 528.1 389 68.6
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 9.9e-148 527.3 335 77.9
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.3e-147 526.9 364 72.0
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 6.4e-147 524.6 300 82.3
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 1.9e-146 523.1 284 85.2
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.9e-146 523.1 317 78.5
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.9e-146 523.1 397 68.0
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.6e-145 520.0 398 69.6
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 4.6e-145 518.5 378 69.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.3e-144 516.2 316 79.4
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 5.1e-144 515.0 347 73.8
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.5e-143 512.7 318 78.3
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 9.6e-143 510.8 339 75.2
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 2.8e-142 509.2 384 68.2
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.6e-142 508.8 396 67.9
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 6.9e-141 504.6 283 82.3
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.4e-139 498.0 398 64.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 9.3e-138 494.2 319 74.0
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 7.9e-137 491.1 400 64.8
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.0e-136 490.7 394 64.5
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.0e-136 490.7 400 65.5
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.3e-136 490.3 383 64.8
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.8e-136 490.0 277 80.5
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 3.0e-136 489.2 401 64.8
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-135 486.5 397 63.0
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.5e-135 486.1 403 64.0
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 2.5e-135 486.1 397 63.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.5e-135 486.1 300 74.7
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 4.3e-135 485.3 314 74.5
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.3e-135 485.3 312 73.4
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.6e-135 485.0 413 61.5
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 3.6e-134 482.3 386 63.5
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.8e-134 481.9 378 64.6
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 4.8e-134 481.9 378 64.6
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 8.1e-134 481.1 405 62.5
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.0e-132 476.5 384 64.6
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.6e-132 476.1 347 71.5
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 3.4e-132 475.7 413 60.8
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.4e-132 475.7 420 60.7
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 1.3e-131 473.8 319 71.2
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.2e-130 468.8 394 61.7
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.7e-129 466.1 324 69.8
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.1e-127 460.7 245 88.6
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.9e-127 459.9 314 70.4
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.5e-127 459.5 379 62.8
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.5e-127 459.5 343 69.1
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.8e-126 456.1 354 66.7
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.8e-126 456.1 354 66.7
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.8e-126 456.1 354 66.7
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.1e-125 454.1 391 60.4
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.8e-125 453.4 434 59.0
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 7.6e-124 448.0 320 66.9
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.7e-123 446.8 409 63.1
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 4.2e-122 442.2 333 65.2
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 3.5e-121 439.1 288 71.9
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.0e-120 436.0 398 59.5
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 8.7e-120 434.5 281 70.8
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.5e-119 433.7 370 61.9
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 4.3e-119 432.2 282 73.8
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 3.1e-117 426.0 380 58.9
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.5e-116 423.7 282 67.7
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.7e-115 420.2 282 73.8
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.1e-114 417.5 249 80.7
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.4e-114 417.2 232 83.2
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 2.5e-114 416.4 282 70.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 9.3e-114 414.5 232 82.8
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.1e-113 413.3 236 83.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.1e-112 408.7 373 56.8
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.9e-111 406.8 385 56.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 4.3e-111 405.6 336 64.0
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.7e-111 404.4 335 59.4
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.2e-110 403.3 337 59.3
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.9e-106 390.2 433 52.0
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.2e-106 388.3 335 58.2
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.9e-104 382.5 417 51.3
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.0e-103 380.2 203 88.7
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 2.6e-103 379.8 247 74.5
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.1e-101 374.4 308 64.3
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 2.4e-101 373.2 202 86.1
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 2.0e-100 370.2 267 64.4
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-98 363.6 247 72.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.2e-94 350.1 315 56.8
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.8e-94 349.7 350 56.9
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 6.1e-89 332.0 276 60.1
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.0e-87 327.0 208 74.5
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 3.3e-87 326.2 300 56.0
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 7.0e-85 318.5 293 59.7
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 5.9e-84 315.5 346 52.0
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.3e-80 303.5 285 61.8
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.4e-79 299.7 348 49.4
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.4e-77 294.3 191 70.7
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.1e-77 292.7 180 80.6
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 9.1e-77 291.6 337 52.5
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-75 287.3 160 82.5
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.7e-75 287.3 302 54.0
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.8e-72 277.3 149 83.2
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.8e-72 275.4 145 84.1
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 7.5e-71 271.9 202 67.3
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.8e-69 267.3 225 63.6
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-68 264.2 195 67.2
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 5.9e-68 262.3 194 64.9
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 6.1e-65 252.3 280 45.7
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 8.0e-65 251.9 154 76.0
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 3.0e-64 250.0 161 72.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 5.2e-64 249.2 239 54.0
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 4.4e-63 246.1 217 61.8
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 7.5e-63 245.4 251 59.0
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.6e-59 232.3 148 73.0
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.5e-58 231.1 236 57.6
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 9.5e-58 228.4 244 52.0
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.5e-55 221.1 274 43.4
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.3e-51 208.0 124 74.2
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-50 204.1 193 59.1
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 4.3e-50 203.0 195 57.4
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.3e-50 203.0 274 44.9
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.8e-48 195.7 215 49.3
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 9.2e-45 185.3 161 57.8
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 2.7e-44 183.7 169 52.1
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 2.1e-41 174.1 119 68.1
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.8e-41 173.7 197 54.8
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 5.4e-37 159.5 178 52.2
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 6.0e-36 156.0 138 60.1
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.4e-31 140.2 81 77.8
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-28 131.7 127 49.6
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.9e-26 124.4 70 85.7
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 3.3e-26 123.6 72 79.2
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 2.8e-25 120.6 150 48.0
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 4.8e-25 119.8 102 55.9
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 2.2e-22 110.9 161 45.3
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 3.5e-20 103.6 163 41.7
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 9.6e-18 95.5 111 50.5
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.7e-14 84.7 42 83.3
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 2.9e-14 84.0 67 59.7
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.4e-14 82.8 149 38.3
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 1.4e-13 81.6 56 69.6
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 5.5e-13 79.7 45 82.2
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 9.3e-13 79.0 40 95.0
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.0e-12 76.3 102 43.1
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 3.0e-11 73.9 123 41.5
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.7e-11 72.8 65 55.4
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 5.6e-10 69.7 261 31.0
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 4.8e-09 66.6 251 28.7
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.5e-07 60.1 41 75.6
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 4.9e-06 56.6 39 69.2


User provided reference genes

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