Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 5.0e-194 681.0 365 100.0
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 3.5e-139 498.8 338 78.1
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 3.9e-138 495.4 338 72.2
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 1.1e-135 487.3 336 71.7
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 3.1e-135 485.7 338 72.8
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 5.4e-132 474.9 338 73.1
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 3.5e-131 472.2 338 72.5
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 9.6e-129 464.2 336 69.9
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.6e-126 456.1 336 69.6
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 1.3e-125 453.8 336 69.6
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 1.3e-125 453.8 336 71.1
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 2.4e-124 449.5 329 71.4
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 2.4e-124 449.5 329 67.8
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.2e-123 447.2 340 67.1
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 4.6e-123 445.3 341 66.6
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.1e-121 440.7 340 66.2
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 8.1e-120 434.5 326 67.5
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 8.1e-120 434.5 336 64.3
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 4.0e-119 432.2 336 63.4
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 5.3e-119 431.8 344 63.1
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 9.0e-119 431.0 347 64.8
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 1.5e-118 430.3 343 62.7
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 3.4e-118 429.1 347 67.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.4e-118 429.1 339 62.8
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 3.4e-118 429.1 339 67.3
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 2.2e-117 426.4 335 67.2
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 4.9e-117 425.2 339 65.5
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 6.4e-117 424.9 340 63.8
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 8.4e-117 424.5 366 59.8
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 1.2e-115 420.6 366 60.7
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.6e-115 420.2 345 62.9
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 2.7e-115 419.5 340 62.6
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 6.0e-115 418.3 340 64.1
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 7.9e-115 417.9 401 54.6
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 1.7e-114 416.8 339 65.2
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 5.1e-114 415.2 343 61.8
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 1.5e-113 413.7 342 59.1
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 2.5e-113 412.9 339 64.0
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 4.3e-113 412.1 357 59.9
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 7.3e-113 411.4 338 64.5
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 2.8e-112 409.5 337 62.9
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 3.6e-112 409.1 330 63.9
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 1.8e-111 406.8 339 61.4
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 1.8e-111 406.8 335 62.4
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 1.2e-110 404.1 335 62.4
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 1.2e-110 404.1 336 61.9
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 3.4e-110 402.5 335 60.3
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 3.4e-110 402.5 336 61.0
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 7.6e-110 401.4 337 61.7
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.3e-109 400.6 339 59.0
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 1.3e-109 400.6 329 57.8
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 3.8e-109 399.1 339 60.5
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 6.4e-109 398.3 344 60.5
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 1.4e-108 397.1 342 59.6
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 1.4e-108 397.1 338 64.8
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 2.4e-108 396.4 340 61.2
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 5.4e-108 395.2 339 60.2
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 9.3e-108 394.4 337 60.2
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.6e-107 393.7 342 61.1
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 2.1e-107 393.3 343 59.5
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 2.3e-106 389.8 340 58.2
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 3.9e-106 389.0 341 59.8
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 3.9e-106 389.0 337 59.3
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 3.9e-106 389.0 337 59.3
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 8.7e-106 387.9 332 59.9
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 1.5e-105 387.1 332 59.9
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 1.5e-105 387.1 347 57.6
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 2.5e-105 386.3 332 59.9
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 2.1e-104 383.3 300 66.7
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 3.7e-104 382.5 338 60.7
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 4.8e-104 382.1 338 59.2
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.4e-103 380.6 329 58.7
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 4.0e-103 379.0 329 58.4
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 4.0e-103 379.0 329 58.1
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 2.9e-101 372.9 313 60.7
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 6.5e-101 371.7 337 57.3
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.4e-100 370.5 335 60.0
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 1.6e-99 367.1 324 59.0
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 6.0e-99 365.2 337 56.4
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 1.8e-98 363.6 319 61.1
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 6.7e-98 361.7 338 54.7
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 1.9e-97 360.1 338 59.2
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 7.4e-97 358.2 338 58.9
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 1.8e-95 353.6 336 58.0
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 2.4e-95 353.2 336 55.4
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 2.4e-95 353.2 336 55.4
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 2.4e-95 353.2 336 55.4
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 9.0e-95 351.3 341 56.9
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 1.5e-94 350.5 264 65.5
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 3.4e-94 349.4 336 55.4
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 4.5e-94 349.0 336 55.7
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 7.6e-94 348.2 336 55.1
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 7.6e-94 348.2 327 55.7
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 1.6e-91 340.5 326 53.7
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.5e-91 339.3 263 68.4
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 6.1e-91 338.6 336 53.3
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 7.4e-89 331.6 283 61.8
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 2.2e-88 330.1 347 52.7
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 5.1e-82 308.9 348 49.7
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.5e-81 307.4 333 55.0
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 1.3e-80 304.3 272 61.0
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.5e-78 297.4 253 60.9
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 4.5e-78 295.8 271 60.5
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.7e-77 293.9 335 52.2
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 1.4e-76 290.8 260 61.5
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.2e-76 289.7 295 53.6
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 5.5e-76 288.9 170 78.2
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 8.8e-74 281.6 386 45.1
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.6e-73 280.0 170 74.1
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 5.3e-71 272.3 314 51.3
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 5.9e-70 268.9 263 52.1
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 1.5e-68 264.2 337 47.5
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 1.2e-67 261.2 170 68.8
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 7.0e-63 245.4 170 67.1
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.9e-61 240.0 172 64.0
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 1.6e-59 234.2 193 63.2
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 6.5e-53 212.2 337 40.7
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 1.1e-52 211.5 276 47.5
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 3.2e-52 209.9 327 39.4
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 6.1e-51 205.7 346 37.3
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 4.9e-48 196.1 163 58.3
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 1.4e-47 194.5 289 44.3
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 1.8e-47 194.1 172 53.5
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 3.8e-45 186.4 149 63.8
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 1.5e-44 184.5 300 41.3
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 9.5e-44 181.8 333 36.9
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 1.3e-40 171.4 94 80.9
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 7.5e-33 145.6 184 43.5
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 7.5e-33 145.6 160 55.0
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 1.7e-32 144.4 158 51.9
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 1.0e-29 135.2 105 65.7
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 2.2e-24 117.5 271 32.5
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 9.2e-23 112.1 81 58.0
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 2.3e-21 107.5 109 61.5
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 1.1e-20 105.1 78 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 3.4e-17 93.6 77 48.1
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 2.6e-09 67.4 114 35.1
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 3.2e-07 60.5 67 50.7


User provided reference genes

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