Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17546 Davidia involucrata HOM05D003486 ORTHO05D004600 5.1e-72 274.2 133 100.0
Dinv15708 Davidia involucrata HOM05D003486 ORTHO05D004600 1.3e-62 243.0 122 98.4
Thecc.04G179700 Theobroma cacao HOM05D003486 ORTHO05D004600 2.7e-20 102.4 135 46.7
QL10p048816 Quercus lobata HOM05D003486 ORTHO05D004600 3.5e-20 102.1 134 47.0
Sed0025407 Sechium edule HOM05D003486 ORTHO05D004600 4.5e-20 101.7 129 46.5
Cfa015169 Carpinus fangiana HOM05D003486 ORTHO05D004600 5.9e-20 101.3 134 47.0
Dinv44191 Davidia involucrata HOM05D003486 ORTHO05D004600 5.9e-20 101.3 135 45.2
Migut.G01067 Erythranthe guttata HOM05D003486 ORTHO05D004600 7.7e-20 100.9 129 45.7
Hund03158 Selenicereus undatus HOM05D003486 ORTHO05D004600 7.7e-20 100.9 129 47.3
SGA_v2.0_scaffold17G08091 Striga asiatica HOM05D003486 ORTHO05D004600 7.7e-20 100.9 135 45.2
FvH4_4g10800 Fragaria vesca HOM05D003486 ORTHO05D004600 1.0e-19 100.5 135 44.4
FAN12G3204 Fragaria x ananassa HOM05D003486 ORTHO05D004600 1.0e-19 100.5 135 44.4
FAN17G1210 Fragaria x ananassa HOM05D003486 ORTHO05D004600 1.0e-19 100.5 135 44.4
Lalb_Chr01g0003151 Lupinus albus HOM05D003486 ORTHO05D004600 1.0e-19 100.5 128 45.3
Manes.11G120800 Manihot esculenta HOM05D003486 ORTHO05D004600 1.0e-19 100.5 136 46.3
MD04G1040400 Malus domestica HOM05D003486 ORTHO05D004600 1.3e-19 100.1 151 43.0
CARHR169800 Cardamine hirsuta HOM05D003486 ORTHO05D004600 1.7e-19 99.8 129 45.7
Glyma.12G052400 Glycine max HOM05D003486 ORTHO05D004600 1.7e-19 99.8 128 45.3
Prupe.1G194100 Prunus persica HOM05D003486 ORTHO05D004600 1.7e-19 99.8 135 44.4
VMungo1127G0960 Vigna mungo HOM05D003486 ORTHO05D004600 1.7e-19 99.8 130 45.4
SalBow3G2610 Salvia bowleyana HOM05D003486 ORTHO05D004600 2.3e-19 99.4 135 45.2
SMO364G0666 Selaginella moellendorffii HOM05D003486 ORTHO05D004600 2.3e-19 99.4 128 44.5
AUR62015385 Chenopodium quinoa HOM05D003486 ORTHO05D004600 2.9e-19 99.0 129 45.0
Dinv21376 Davidia involucrata HOM05D003486 ORTHO05D004600 2.9e-19 99.0 46 97.8
Duzib151G0706 Durio zibethinus HOM05D003486 ORTHO05D004600 2.9e-19 99.0 133 45.1
TWI15G0158 Tripterygium wilfordii HOM05D003486 ORTHO05D004600 2.9e-19 99.0 129 45.7
TWI15G0580 Tripterygium wilfordii HOM05D003486 ORTHO05D004600 2.9e-19 99.0 129 45.7
Aa31LG10G13760 Aethionema arabicum HOM05D003486 ORTHO05D004600 3.8e-19 98.6 128 43.8
EL10Ac3g05937 Beta vulgaris HOM05D003486 ORTHO05D004600 3.8e-19 98.6 132 46.2
AUR62002305 Chenopodium quinoa HOM05D003486 ORTHO05D004600 3.8e-19 98.6 129 45.0
Ca_20787_v3 Cicer arietinum L. HOM05D003486 ORTHO05D004600 3.8e-19 98.6 128 44.5
Phvul.011G054400 Phaseolus vulgaris HOM05D003486 ORTHO05D004600 3.8e-19 98.6 130 45.4
Eucgr.A00081 Eucalyptus grandis HOM05D003486 ORTHO05D004600 5.0e-19 98.2 129 45.0
Thhalv10005755m.g Eutrema salsugineum HOM05D003486 ORTHO05D004600 5.0e-19 98.2 129 45.0
Gohir.A10G137350 Gossypium hirsutum HOM05D003486 ORTHO05D004600 5.0e-19 98.2 133 45.1
Gohir.D10G129301 Gossypium hirsutum HOM05D003486 ORTHO05D004600 5.0e-19 98.2 133 45.1
Gorai.011G142600 Gossypium raimondii HOM05D003486 ORTHO05D004600 5.0e-19 98.2 133 45.1
Sp5g03730 Schrenkiella parvula HOM05D003486 ORTHO05D004600 5.0e-19 98.2 135 43.7
AT3G59410 Arabidopsis thaliana HOM05D003486 ORTHO05D004600 6.6e-19 97.8 129 45.0
MELO3C011660.2 Cucumis melo HOM05D003486 ORTHO05D004600 6.6e-19 97.8 129 46.5
RcHm_v2.0_Chr4g0406781 Rosa chinensis HOM05D003486 ORTHO05D004600 6.6e-19 97.8 135 43.7
Sabra07G0104700 Salix brachista HOM05D003486 ORTHO05D004600 6.6e-19 97.8 135 45.9
BcaC07g40280 Brassica carinata HOM05D003486 ORTHO05D004600 8.6e-19 97.4 132 44.7
BcaC07g40457 Brassica carinata HOM05D003486 ORTHO05D004600 8.6e-19 97.4 131 45.0
C08p34420 Brassica napus HOM05D003486 ORTHO05D004600 8.6e-19 97.4 132 44.7
Potri.007G128300 Populus trichocarpa HOM05D003486 ORTHO05D004600 8.6e-19 97.4 135 45.2
Zm00001eb078800 Zea mays HOM05D003486 ORTHO05D004600 8.6e-19 97.4 133 43.6
Psat7g214880 Pisum sativum HOM05D003486 ORTHO05D004600 1.1e-18 97.1 127 44.9
Carub.0005s2615 Capsella rubella HOM05D003486 ORTHO05D004600 1.5e-18 96.7 129 43.4
CsaV3_6G003940 Cucumis sativus L. HOM05D003486 ORTHO05D004600 1.5e-18 96.7 129 45.7
CDE02G1871 Ceratophyllum demersum HOM05D003486 ORTHO05D004600 1.9e-18 96.3 128 46.1
PGR083G0732 Punica granatum HOM05D003486 ORTHO05D004600 1.9e-18 96.3 129 44.2
Ciclev10019579m.g Citrus clementina HOM05D003486 ORTHO05D004600 2.5e-18 95.9 137 43.1
Rhsim02G0076900 Rhododendron simsii HOM05D003486 ORTHO05D004600 2.5e-18 95.9 129 45.7
THA.LOC104803678 Tarenaya hassleriana HOM05D003486 ORTHO05D004600 2.5e-18 95.9 129 45.0
TPR.G34255 Trifolium pratense HOM05D003486 ORTHO05D004600 2.5e-18 95.9 130 44.6
ATR0824G223 Amborella trichopoda HOM05D003486 ORTHO05D004600 3.3e-18 95.5 134 47.0
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 3.3e-18 95.5 134 46.3
A09p51690 Brassica napus HOM05D003486 ORTHO05D004600 3.3e-18 95.5 130 44.6
CSS0039550 Camellia sinensis var. sinensis HOM05D003486 ORTHO05D004600 3.3e-18 95.5 129 44.2
CANSAT78G0197 Cannabis sativa HOM05D003486 ORTHO05D004600 3.3e-18 95.5 128 43.8
Oeu061594.1 Olea europaea HOM05D003486 ORTHO05D004600 4.2e-18 95.1 135 43.0
Sc19g0002660 Simmondsia chinensis HOM05D003486 ORTHO05D004600 4.2e-18 95.1 130 43.1
arahy.Tifrunner.gnm1.ann1.NQA14U Arachis hypogaea HOM05D003486 ORTHO05D004600 5.5e-18 94.7 132 43.2
Lj3g0017553 Lotus japonicus HOM05D003486 ORTHO05D004600 5.5e-18 94.7 128 43.8
Medtr4g067160 Medicago truncatula HOM05D003486 ORTHO05D004600 5.5e-18 94.7 131 43.5
Prupe.7G151400 Prunus persica HOM05D003486 ORTHO05D004600 5.5e-18 94.7 117 38.5
arahy.Tifrunner.gnm1.ann1.Q0VLRE Arachis hypogaea HOM05D003486 ORTHO05D004600 7.2e-18 94.4 132 43.2
Sopen11g020460 Solanum pennellii HOM05D003486 ORTHO05D004600 2.1e-17 92.8 131 41.2
Actinidia11303 Actinidia chinensis HOM05D003486 ORTHO05D004600 2.8e-17 92.4 125 44.8
Cc03_g12950 Coffea canephora HOM05D003486 ORTHO05D004600 2.8e-17 92.4 134 44.0
Atru.chr3.1489 Acer truncatum HOM05D003486 ORTHO05D004600 3.6e-17 92.0 128 43.8
PSO675G4708 Papaver somniferum HOM05D003486 ORTHO05D004600 4.7e-17 91.7 129 44.2
PSO017G7170 Papaver somniferum HOM05D003486 ORTHO05D004600 6.1e-17 91.3 129 44.2
HanXRQChr03g0091131 Helianthus annuus HOM05D003486 ORTHO05D004600 1.4e-16 90.1 127 42.5
Mapoly0088s0047 Marchantia polymorpha HOM05D003486 ORTHO05D004600 1.4e-16 90.1 138 42.8
Lsat_1_v5_gn_3_115420 Lactuca sativa HOM05D003486 ORTHO05D004600 3.0e-16 89.0 131 42.0
Haze_01509 Corylus avellana HOM05D003486 ORTHO05D004600 4.0e-16 88.6 118 47.5
TPR.G8787 Trifolium pratense HOM05D003486 ORTHO05D004600 5.2e-16 88.2 114 47.4
SEGI_08545 Sequoiadendron giganteum HOM05D003486 ORTHO05D004600 6.8e-16 87.8 129 42.6
GSVIVG01010758001 Vitis vinifera HOM05D003486 ORTHO05D004600 6.8e-16 87.8 120 45.8
BolC8t51043H Brassica oleracea HOM05D003486 ORTHO05D004600 8.9e-16 87.4 158 37.3
AL5G41310 Arabidopsis lyrata HOM05D003486 ORTHO05D004600 1.2e-15 87.0 160 36.2
Aqoxy2G04161 Aquilegia oxysepala HOM05D003486 ORTHO05D004600 2.6e-15 85.9 128 46.1
BraA09t40605Z Brassica rapa HOM05D003486 ORTHO05D004600 3.4e-15 85.5 156 37.2
Nn1g09603 Nelumbo nucifera HOM05D003486 ORTHO05D004600 4.4e-15 85.1 116 44.0
Pp3c26_5370 Physcomitrium patens HOM05D003486 ORTHO05D004600 7.5e-15 84.3 136 42.6
ECA240G0242 Erigeron canadensis HOM05D003486 ORTHO05D004600 9.8e-15 84.0 153 37.3
Lj6A53G34 Lonicera japonica HOM05D003486 ORTHO05D004600 2.2e-14 82.8 152 36.2
RcHm_v2.0_Chr2g0102471 Rosa chinensis HOM05D003486 ORTHO05D021574 2.8e-14 82.4 110 37.3
EL10Ac2g04155 Beta vulgaris HOM05D003486 ORTHO05D004600 8.3e-14 80.9 114 37.7
BcaC02g10121 Brassica carinata HOM05D003486 ORTHO05D004600 2.4e-13 79.3 136 39.0
EL10Ac8g18701 Beta vulgaris HOM05D003486 ORTHO05D021574 5.4e-13 78.2 126 37.3
RcHm_v2.0_Chr2g0102541 Rosa chinensis HOM05D003486 ORTHO05D022430 5.9e-12 74.7 131 33.6
FvH4_1g14230 Fragaria vesca HOM05D000084 ORTHO05D021574 2.3e-11 72.8 113 31.9
Cre01.g038000 Chlamydomonas reinhardtii HOM05D003486 ORTHO05D004600 6.6e-11 71.2 89 44.9
PRCOL_00004354 Prasinoderma coloniale HOM05D003486 ORTHO05D004600 6.6e-11 71.2 131 34.4
QL04p017669 Quercus lobata HOM05D003486 ORTHO05D004600 1.1e-10 70.5 110 37.3
Ah.06g196060 Amaranthus hybridus HOM05D003486 ORTHO05D004600 7.3e-10 67.8 101 38.6
Ah.07g206270 Amaranthus hybridus HOM05D003486 ORTHO05D004600 1.2e-07 60.5 103 39.8
TPR.G14766 Trifolium pratense HOM05D003486 ORTHO05D004600 1.5e-07 60.1 70 44.3
MCO05G349 Micromonas commoda HOM05D003486 ORTHO05D004600 2.0e-07 59.7 108 35.2
ClCG08G004750 Citrullus lanatus HOM05D003486 ORTHO05D004600 3.4e-07 58.9 97 37.1
Hma1.2p1_0847F.1_g227880 Hydrangea macrophylla HOM05D003486 ORTHO05D004600 3.4e-07 58.9 80 41.2
Cre17.g726950 Chlamydomonas reinhardtii HOM05D003486 ORTHO05D011329 4.4e-07 58.5 90 35.6
Cc07_g19140 Coffea canephora HOM05D000246 ORTHO05D004600 7.5e-07 57.8 106 34.9
PRCOL_00004602 Prasinoderma coloniale HOM05D003486 ORTHO05D011329 1.3e-06 57.0 88 35.2
Cc00_g29260 Coffea canephora HOM05D003486 ORTHO05D004600 2.2e-06 56.2 80 36.2
Nitab4.5_0001263g0070 Nicotiana tabacum HOM05D003486 ORTHO05D004600 6.4e-06 54.7 80 43.8
Oeu008123.1 Olea europaea HOM05D000738 ORTHO05D000675 6.4e-06 54.7 79 32.9
vmacro17146 Vaccinium macrocarpon HOM05D000163 ORTHO05D000219 8.3e-06 54.3 69 46.4


User provided reference genes

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