Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.6e-245 851.7 440 100.0
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 4.9e-228 794.3 440 92.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.9e-217 758.1 440 89.3
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-216 755.7 440 89.1
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.8e-214 749.2 442 87.8
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.8e-214 747.3 440 88.4
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.1e-211 738.0 440 85.7
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 7.0e-211 737.3 442 86.2
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.1e-210 735.7 443 86.9
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 7.8e-210 733.8 439 87.2
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.7e-209 732.6 442 85.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.1e-208 729.9 440 85.5
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.6e-207 726.1 442 85.3
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.6e-207 726.1 442 83.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.6e-207 726.1 444 85.6
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.2e-207 724.2 447 85.2
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.1e-206 723.4 443 84.0
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.8e-206 722.6 443 83.5
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.1e-206 721.8 441 85.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.8e-206 720.7 444 83.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.5e-205 719.5 444 83.1
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.5e-205 719.5 443 83.7
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.0e-205 719.2 440 83.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.6e-205 718.8 444 82.4
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.6e-205 718.8 446 84.1
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.4e-205 718.4 441 84.6
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.8e-205 717.6 441 83.2
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 8.3e-204 713.8 443 84.0
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.1e-203 713.4 441 83.7
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-203 713.4 444 83.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.4e-203 713.0 443 83.3
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.4e-203 712.2 443 82.2
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.4e-203 712.2 439 83.8
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.1e-203 711.4 419 86.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.4e-203 711.1 439 83.4
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 7.1e-203 710.7 440 84.1
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.5e-202 708.4 444 82.4
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.6e-202 708.0 440 84.1
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.0e-201 706.8 445 83.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-201 706.1 439 83.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.3e-201 705.7 440 82.3
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.0e-201 705.3 440 83.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.9e-201 704.9 438 82.9
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 8.6e-201 703.7 441 82.8
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.1e-200 703.4 442 83.0
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.5e-200 703.0 442 82.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 3.3e-200 701.8 445 82.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 7.3e-200 700.7 443 82.2
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.2e-199 699.9 442 81.7
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.6e-199 699.5 441 82.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.1e-199 699.1 443 81.7
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.8e-199 698.7 441 81.9
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.8e-199 698.7 441 81.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.8e-199 698.7 441 82.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.6e-199 698.4 440 82.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 4.7e-199 698.0 440 81.6
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 6.2e-199 697.6 439 82.0
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 8.1e-199 697.2 440 81.8
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.4e-198 695.7 443 81.7
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.2e-197 693.3 442 79.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 81.5
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.6e-197 692.2 441 81.6
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.6e-197 692.2 442 81.0
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 4.4e-197 691.4 440 81.8
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 2.2e-196 689.1 443 81.3
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 2.9e-196 688.7 438 81.5
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 6.4e-196 687.6 443 82.4
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 8.4e-196 687.2 440 81.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.9e-195 686.0 440 81.4
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.9e-195 686.0 437 80.3
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.2e-194 683.3 442 80.3
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.3e-193 679.1 438 81.1
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 3.0e-193 678.7 438 79.5
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.0e-193 678.7 438 79.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-192 676.8 440 81.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.3e-192 675.2 438 79.5
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 4.3e-192 674.9 413 84.0
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 4.3e-192 674.9 441 78.0
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.1e-191 672.5 444 79.1
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.8e-191 672.2 442 78.3
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.8e-191 672.2 438 79.7
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 4.7e-191 671.4 439 79.7
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.1e-190 670.2 399 84.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.4e-190 669.8 440 79.8
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.8e-190 669.5 448 79.0
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.4e-190 669.1 399 83.7
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 2.6e-189 665.6 438 79.7
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.4e-189 665.2 440 79.1
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.4e-189 665.2 440 79.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-188 663.3 441 79.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.2e-188 662.5 441 78.2
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 2.7e-186 655.6 442 78.1
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-186 655.2 441 78.5
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.5e-186 655.2 441 78.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 6.0e-186 654.4 443 77.9
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.0e-185 653.7 438 77.6
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.3e-185 653.3 442 78.3
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.7e-185 652.9 482 73.9
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.3e-185 652.5 388 86.6
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.9e-185 651.7 440 77.7
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 5.1e-185 651.4 440 78.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.6e-185 651.0 377 86.7
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.5e-184 649.0 440 76.6
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.3e-184 648.3 438 77.9
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-184 647.5 438 77.9
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 6.2e-183 644.4 416 80.3
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 6.2e-183 644.4 416 80.3
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 6.2e-183 644.4 440 78.0
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 8.1e-183 644.0 438 76.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 8.1e-183 644.0 438 76.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-181 639.8 380 87.4
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 2.6e-181 639.0 389 82.8
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.3e-180 636.7 397 80.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 7.1e-179 630.9 385 81.8
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-178 630.2 427 76.8
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.5e-178 628.6 397 80.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 6.7e-177 624.4 383 81.5
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.9e-176 622.9 397 79.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.4e-174 616.7 487 67.1
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.0e-174 615.1 444 74.8
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.8e-169 599.7 438 72.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.9e-161 572.0 366 81.4
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 3.4e-157 558.9 392 76.8
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 6.1e-154 548.1 307 91.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.5e-152 543.5 372 71.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 8.2e-151 537.7 397 68.8
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-149 533.5 361 78.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-149 533.1 371 69.8
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.5e-147 526.2 366 69.7
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-144 517.3 376 67.8
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.5e-144 516.9 370 69.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.0e-144 516.5 397 66.2
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-143 513.1 400 65.5
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-143 513.1 409 64.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.8e-143 512.7 401 66.1
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.1e-142 510.8 366 68.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 3.5e-141 505.8 387 64.9
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.9e-141 505.0 361 71.5
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.5e-136 490.3 380 63.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 6.3e-135 485.0 361 66.8
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.8e-132 475.7 381 62.2
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.4e-128 462.6 317 75.7
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 9.7e-128 461.1 360 62.2
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.3e-111 407.5 365 59.7
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.0e-100 371.3 367 56.1
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.1e-89 334.7 302 59.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-81 308.1 226 70.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-68 264.6 186 76.9
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.2e-66 255.8 328 43.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 4.6e-61 239.6 198 61.6
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-58 231.5 139 85.6
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.3e-58 231.5 123 87.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.8e-55 219.9 160 70.0
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.1e-41 173.3 162 56.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.4e-38 164.9 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.3e-34 151.8 111 74.8
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 5.9e-32 142.9 82 89.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.0e-31 142.1 81 87.7
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.0e-28 132.1 120 54.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.0e-24 117.9 80 67.5
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.0e-19 101.3 144 43.8
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.7e-18 97.1 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-14 85.5 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 9.1e-09 65.9 143 37.1


User provided reference genes

Program Settings