Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 2134.8 1130 100.0
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1895.2 1130 87.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1872.1 1130 86.1
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1870.9 1141 85.9
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1860.1 1131 84.9
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1848.9 1141 83.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1834.3 1131 83.6
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1827.8 1131 83.2
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1825.4 1136 82.3
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1825.4 1137 82.5
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1820.1 1130 83.7
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1817.4 1138 82.6
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1815.4 1134 83.0
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1808.1 1134 82.4
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1801.6 1132 81.5
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1799.6 1131 81.2
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1798.9 1133 82.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1796.2 1131 81.0
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1793.9 1137 81.5
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1792.7 1136 81.8
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1791.9 1133 80.8
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1790.8 1134 81.3
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1790.4 1130 81.5
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1788.5 1130 81.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1783.5 1139 80.9
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1780.8 1131 81.9
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1780.0 1131 81.8
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1775.8 1130 79.9
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1773.4 1132 81.3
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1772.3 1130 81.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1771.9 1133 81.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1771.5 1131 81.3
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1765.7 1130 80.3
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1764.2 1136 80.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1763.8 1136 80.1
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1758.4 1133 79.1
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1755.7 1133 78.9
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1754.2 1133 78.6
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1753.4 1183 77.4
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1752.6 1131 79.1
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1752.6 1135 79.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1749.2 1133 78.6
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1747.6 1134 78.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1747.6 1131 80.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1747.3 1130 79.6
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1740.3 1130 79.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1734.5 1134 79.5
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1733.0 1134 80.2
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1731.5 1130 78.6
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1721.8 1132 78.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1713.4 1100 80.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1704.5 1133 77.8
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1692.2 1130 76.9
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1683.3 1135 76.7
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1680.6 1130 76.3
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1679.8 1130 76.7
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1672.5 1137 76.0
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1660.6 1137 74.4
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1654.4 1144 74.9
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1649.8 1135 74.9
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1639.4 1135 74.5
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1638.6 1027 82.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1635.9 1011 84.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1633.2 1137 72.6
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1627.5 1130 74.2
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1627.1 1137 75.4
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1136 72.6
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1136 72.5
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1619.8 1130 74.2
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1617.8 1136 72.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1617.8 1136 72.6
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1616.3 1130 74.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1615.5 1147 74.2
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1615.5 1147 74.2
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1615.5 1136 71.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1609.7 1134 71.5
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1609.0 1133 72.6
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1602.4 1135 74.1
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1598.6 1134 73.5
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1596.3 1137 73.3
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1594.7 1103 75.6
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1592.4 1138 71.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1590.5 1138 71.2
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1588.5 1138 71.1
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1138 71.3
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1580.5 1135 70.1
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1576.6 1135 70.4
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1134 72.8
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1575.5 1135 70.4
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1569.7 1134 70.5
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1565.8 1134 70.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1549.6 1077 73.4
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1540.4 1070 75.2
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1535.8 1032 75.7
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1530.8 921 84.6
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1524.2 926 85.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1482.6 1135 70.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1459.9 1129 69.1
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1453.0 1152 66.3
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1447.6 1097 70.7
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1396.3 1127 64.4
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1378.2 1066 65.9
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1368.2 1089 63.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1355.1 883 79.2
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1352.0 893 76.4
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1271.5 823 80.3
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1206.0 799 80.2
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1181.4 891 69.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1125.9 1073 53.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 0.0e+00 1113.2 669 85.5
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1101.7 1072 52.2
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 4.6e-307 1058.1 760 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.9e-306 1055.0 1073 50.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 7.4e-297 1024.2 1066 50.8
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 2.4e-271 939.5 607 79.6
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.3e-256 890.6 937 55.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 5.4e-223 778.9 1081 41.6
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 5.8e-217 758.8 614 63.4
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 6.3e-179 632.5 421 82.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 8.0e-166 589.0 366 79.5
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 7.2e-151 539.3 432 67.4
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.1e-125 455.7 354 65.3
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.6e-105 388.7 319 63.3
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.3e-103 380.9 1181 28.7
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.8e-100 370.2 313 65.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.1e-95 355.9 335 63.6
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.1e-90 339.3 1142 28.1
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 7.4e-87 326.6 364 50.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 5.0e-75 287.3 333 51.1
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 9.1e-69 266.5 322 51.6
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.5e-47 196.1 153 70.6
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 9.5e-34 150.2 100 80.0
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.6e-33 149.4 110 78.2
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 8.8e-32 143.7 643 22.7
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 9.2e-29 133.7 86 81.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 7.8e-28 130.6 86 80.2
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 5.0e-27 127.9 69 82.6
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-26 126.3 68 82.4
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 2.0e-07 62.8 45 77.8
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 2.9e-06 58.9 86 48.8


User provided reference genes

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