Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17514 Davidia involucrata HOM05D004080 ORTHO05D004855 1.5e-66 256.1 142 100.0
Nitab4.5_0003981g0090 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.7e-28 129.8 105 70.5
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 2.8e-28 129.0 104 70.2
Dinv37823 Davidia involucrata HOM05D004080 ORTHO05D004855 4.8e-28 128.3 104 70.2
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 1.4e-27 126.7 104 68.3
Peaxi162Scf00038g02253 Petunia axillaris HOM05D004080 ORTHO05D004855 1.4e-27 126.7 104 68.3
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 2.4e-27 125.9 104 68.3
Nitab4.5_0008798g0030 Nicotiana tabacum HOM05D004080 ORTHO05D004855 3.1e-27 125.6 105 69.5
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 5.9e-26 121.3 104 67.3
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 5.9e-26 121.3 105 67.6
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 5.9e-26 121.3 95 69.5
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 1.3e-25 120.2 104 67.3
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 2.2e-25 119.4 108 63.9
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 2.9e-25 119.0 107 66.4
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 3.8e-25 118.6 102 67.6
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 3.8e-25 118.6 108 65.7
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 5.0e-25 118.2 108 63.9
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 6.5e-25 117.9 103 66.0
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 8.5e-25 117.5 106 66.0
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 1.1e-24 117.1 104 64.4
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 1.5e-24 116.7 102 65.7
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 1.9e-24 116.3 91 68.1
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.9e-24 116.3 107 64.5
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 2.5e-24 115.9 102 65.7
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 2.5e-24 115.9 104 60.6
FvH4_6g35750 Fragaria vesca HOM05D004080 ORTHO05D004855 3.2e-24 115.5 107 65.4
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 3.2e-24 115.5 107 65.4
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 3.2e-24 115.5 104 65.4
Oeu033128.1 Olea europaea HOM05D004080 ORTHO05D004855 4.2e-24 115.2 92 67.4
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 5.5e-24 114.8 107 65.4
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 7.2e-24 114.4 104 61.5
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 1.2e-23 113.6 112 64.3
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 1.6e-23 113.2 107 64.5
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.6e-23 113.2 107 64.5
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 2.7e-23 112.5 106 63.2
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 2.7e-23 112.5 89 68.5
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 2.7e-23 112.5 104 62.5
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 2.7e-23 112.5 105 63.8
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 1.0e-22 110.5 103 65.0
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 1.4e-22 110.2 106 61.3
Nitab4.5_0000357g0150 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.4e-22 110.2 103 64.1
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 2.3e-22 109.4 106 62.3
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 2.3e-22 109.4 105 61.0
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 3.0e-22 109.0 106 63.2
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 3.0e-22 109.0 106 63.2
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 3.0e-22 109.0 106 64.2
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 4.0e-22 108.6 107 59.8
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 4.0e-22 108.6 106 62.3
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 5.2e-22 108.2 104 59.6
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 5.2e-22 108.2 105 59.0
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 6.8e-22 107.8 104 59.6
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 8.8e-22 107.5 109 59.6
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 8.8e-22 107.5 104 61.5
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 8.8e-22 107.5 106 62.3
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 1.2e-21 107.1 104 59.6
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 1.5e-21 106.7 104 59.6
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 1.5e-21 106.7 117 56.4
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 2.0e-21 106.3 104 59.6
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 2.0e-21 106.3 104 59.6
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 2.0e-21 106.3 104 58.7
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 2.6e-21 105.9 104 59.6
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 2.6e-21 105.9 121 56.2
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 2.6e-21 105.9 104 60.6
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 2.6e-21 105.9 100 61.0
Actinidia24431 Actinidia chinensis HOM05D004080 ORTHO05D004855 3.4e-21 105.5 91 63.7
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 3.4e-21 105.5 104 59.6
BcaC08g46690 Brassica carinata HOM05D004080 ORTHO05D004855 3.4e-21 105.5 91 62.6
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 4.4e-21 105.1 104 60.6
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 5.7e-21 104.8 104 58.7
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 5.7e-21 104.8 114 57.0
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 7.5e-21 104.4 104 59.6
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 7.5e-21 104.4 104 58.7
Nitab4.5_0004589g0010 Nicotiana tabacum HOM05D004080 ORTHO05D004855 7.5e-21 104.4 89 65.2
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 9.8e-21 104.0 116 56.0
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 1.3e-20 103.6 104 58.7
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 1.3e-20 103.6 104 57.7
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 1.3e-20 103.6 104 57.7
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 1.3e-20 103.6 104 57.7
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 1.7e-20 103.2 106 61.3
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 1.7e-20 103.2 106 61.3
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 1.7e-20 103.2 96 58.3
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 2.2e-20 102.8 105 58.1
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 2.2e-20 102.8 105 58.1
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 2.2e-20 102.8 112 56.2
Gohir.A05G141401 Gossypium hirsutum HOM05D004080 ORTHO05D004855 2.2e-20 102.8 114 56.1
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 2.2e-20 102.8 104 56.7
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 2.8e-20 102.4 104 61.5
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 2.8e-20 102.4 104 60.6
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 2.8e-20 102.4 104 57.7
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 3.7e-20 102.1 105 58.1
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 1.4e-19 100.1 91 61.5
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 1.4e-19 100.1 104 56.7
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 1.4e-19 100.1 105 58.1
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 1.4e-19 100.1 105 58.1
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 1.8e-19 99.8 104 55.8
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 1.8e-19 99.8 104 57.7
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 2.4e-19 99.4 104 55.8
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 3.1e-19 99.0 104 55.8
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 3.1e-19 99.0 104 55.8
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 3.1e-19 99.0 104 55.8
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 3.1e-19 99.0 104 57.7
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 3.1e-19 99.0 108 56.5
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 4.1e-19 98.6 106 58.5
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 4.1e-19 98.6 104 58.7
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 7.0e-19 97.8 91 61.5
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 7.0e-19 97.8 106 58.5
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 7.0e-19 97.8 106 57.5
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 7.0e-19 97.8 112 53.6
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 7.0e-19 97.8 112 53.6
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 9.1e-19 97.4 104 56.7
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 9.1e-19 97.4 104 56.7
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 9.1e-19 97.4 112 53.6
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 1.6e-18 96.7 104 55.8
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 1.6e-18 96.7 106 55.7
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 2.7e-18 95.9 89 57.3
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 4.5e-18 95.1 108 55.6
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 4.5e-18 95.1 113 53.1
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 5.9e-18 94.7 108 54.6
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 1.3e-17 93.6 103 53.4
HPP92_011050 Vanilla planifolia HOM05D004080 ORTHO05D004855 1.3e-17 93.6 99 55.6
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 2.3e-17 92.8 104 54.8
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 5.0e-17 91.7 106 55.7
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 6.5e-17 91.3 89 57.3
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 1.1e-16 90.5 106 54.7
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 2.5e-16 89.4 91 58.2
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 4.2e-16 88.6 93 59.1
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 4.2e-16 88.6 109 54.1
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 5.5e-16 88.2 113 48.7
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 1.2e-15 87.0 114 49.1
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 2.1e-15 86.3 113 47.8
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 3.6e-15 85.5 105 53.3
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 3.6e-15 85.5 105 53.3
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 4.7e-15 85.1 113 47.8
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 8.0e-15 84.3 109 53.2
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 1.8e-14 83.2 112 50.0
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 2.3e-14 82.8 102 53.9
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 2.3e-14 82.8 102 53.9
SEGI_15203 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 5.2e-14 81.6 108 48.1
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 2.2e-12 76.3 95 56.8
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 2.8e-12 75.9 127 44.9
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 1.4e-11 73.6 103 47.6
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 1.8e-11 73.2 96 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 2.4e-11 72.8 109 46.8
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 2.4e-11 72.8 68 60.3
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 5.4e-11 71.6 91 50.5
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 9.2e-11 70.9 121 43.0
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 3.3e-08 62.4 91 44.0
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.6e-07 60.1 68 52.9
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 1.6e-07 60.1 64 56.2
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 3.6e-07 58.9 48 66.7


User provided reference genes

Program Settings