Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.6e-146 522.3 321 100.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.8e-116 422.5 325 78.2
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.3e-100 370.5 291 76.3
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.1e-99 365.5 322 68.9
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.0e-94 350.9 320 67.2
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 2.3e-94 349.7 345 62.9
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 3.0e-94 349.4 321 66.7
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.0e-89 334.3 324 61.4
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.5e-88 329.7 321 63.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.6e-87 327.0 319 66.5
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 8.0e-87 324.7 325 64.9
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 3.3e-85 319.3 286 62.2
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 5.7e-85 318.5 321 64.8
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.4e-85 318.2 322 63.4
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 7.4e-85 318.2 291 67.4
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.7e-84 317.0 323 58.5
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.8e-83 313.5 321 61.7
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.6e-82 310.5 293 64.8
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 4.5e-82 308.9 321 63.2
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.0e-81 307.8 321 62.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.2e-81 306.6 321 62.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.2e-80 302.4 321 61.7
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.5e-80 302.0 324 57.1
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.2e-79 300.8 324 60.5
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 3.6e-79 299.3 322 63.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 6.1e-79 298.5 325 62.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.0e-78 295.8 318 54.7
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.8e-78 294.7 318 58.5
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 3.4e-77 292.7 326 59.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.7e-77 291.2 319 57.4
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.7e-76 290.4 323 60.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.7e-76 290.4 318 59.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 3.7e-76 289.3 318 63.2
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 3.5e-74 282.7 321 57.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 4.5e-74 282.3 318 61.6
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 7.7e-74 281.6 320 58.4
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 7.7e-74 281.6 321 58.3
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 1.7e-73 280.4 321 53.0
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.9e-73 279.6 322 59.6
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 6.5e-73 278.5 287 65.9
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 8.5e-73 278.1 321 58.6
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.5e-72 276.6 321 56.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.5e-72 276.6 315 57.5
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.5e-72 276.6 315 57.1
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 9.4e-72 274.6 326 56.4
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 3.6e-71 272.7 328 57.0
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 4.7e-71 272.3 324 52.2
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 8.0e-71 271.6 324 57.4
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.0e-70 271.2 315 61.3
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 3.0e-70 269.6 315 59.7
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.2e-70 268.9 315 61.0
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 6.8e-70 268.5 315 61.0
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 1.5e-69 267.3 294 58.2
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 5.7e-69 265.4 321 55.5
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.8e-69 264.6 283 65.4
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.3e-68 264.2 491 44.6
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.3e-68 264.2 320 54.7
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.2e-68 263.5 423 45.9
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 3.7e-68 262.7 319 57.1
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 8.3e-68 261.5 288 58.7
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 7.0e-67 258.5 335 52.8
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.2e-66 257.7 321 52.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.6e-66 257.3 315 58.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 2.7e-66 256.5 317 58.0
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 7.7e-66 255.0 316 59.2
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 5.0e-65 252.3 328 50.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 4.2e-64 249.2 319 48.0
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.0e-62 244.6 314 48.1
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.4e-62 244.2 321 51.1
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 6.8e-62 241.9 313 52.7
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 2.2e-60 236.9 329 47.7
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.1e-59 234.6 283 56.2
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.8e-59 233.8 281 51.2
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 3.5e-58 229.6 311 52.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.3e-57 227.6 320 49.7
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 3.9e-57 226.1 330 45.5
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 8.6e-57 224.9 319 45.5
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.1e-56 224.6 319 44.8
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.9e-56 223.8 323 49.2
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 5.6e-56 222.2 324 54.3
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 4.7e-55 219.2 280 48.2
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.3e-54 216.9 319 44.5
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 3.1e-54 216.5 203 61.6
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.4e-53 213.0 321 48.9
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 5.8e-53 212.2 205 68.8
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 2.2e-52 210.3 310 48.4
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 3.7e-52 209.5 269 54.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 4.9e-52 209.1 202 60.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.1e-51 208.0 238 60.9
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.4e-51 206.8 271 55.4
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 3.2e-51 206.5 284 53.9
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 5.4e-51 205.7 320 44.4
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 5.4e-51 205.7 288 47.2
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 3.5e-50 203.0 322 43.2
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 6.0e-50 202.2 268 55.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 2.3e-49 200.3 321 39.9
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 5.0e-49 199.1 281 47.7
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.5e-48 197.6 326 46.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-48 196.4 226 56.6
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 7.3e-48 195.3 321 39.9
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 9.5e-48 194.9 317 46.1
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-47 194.5 326 43.6
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.1e-47 193.7 321 39.6
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.5e-45 187.6 260 53.1
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.7e-44 184.1 280 48.9
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.9e-44 183.3 287 50.2
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.7e-44 183.0 120 81.7
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.4e-43 181.0 208 58.7
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 3.2e-43 179.9 315 41.0
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 2.3e-41 173.7 222 50.0
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 3.0e-41 173.3 319 37.0
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.9e-41 172.9 245 53.9
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 8.6e-41 171.8 321 36.4
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.9e-40 170.6 317 43.2
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.6e-39 166.4 321 36.4
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 6.8e-38 162.2 319 37.9
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 2.0e-37 160.6 275 38.9
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 5.8e-37 159.1 319 39.5
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.7e-36 156.4 268 41.4
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.4e-36 155.6 237 43.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 6.0e-34 149.1 269 37.9
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.6e-33 145.6 130 66.2
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.5e-29 134.4 278 37.4
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 9.9e-29 131.7 270 34.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.2e-27 126.7 102 64.7
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 5.4e-27 125.9 235 37.0
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 4.3e-24 116.3 314 30.6
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 9.6e-24 115.2 110 62.7
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.9e-22 109.0 107 61.7
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 5.8e-21 105.9 302 35.8
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.6e-21 105.5 175 38.9
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.1e-18 97.4 98 55.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.0e-17 95.1 278 32.7
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.3e-17 94.7 169 38.5
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 8.7e-17 92.0 205 44.9
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.3e-16 90.1 236 33.5
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.3e-16 89.7 278 30.2
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 7.3e-16 89.0 176 44.9
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-15 88.2 77 63.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 3.4e-13 80.1 75 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 6.2e-07 59.3 277 29.6
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 1.8e-06 57.8 223 27.8


User provided reference genes

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