Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 6.3e-238 827.0 412 100.0
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.2e-39 168.3 439 37.8
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 4.3e-37 159.8 412 35.4
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.3e-36 158.3 426 36.2
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.0e-33 148.7 440 35.2
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 8.5e-33 145.6 426 34.7
CiPaw.09G066800 Carya illinoinensis HOM05D009670 ORTHO05D010890 5.5e-32 142.9 445 33.7
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.6e-31 141.4 417 33.6
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 6.1e-31 139.4 444 34.5
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.0e-30 138.7 421 34.4
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 1.5e-29 134.8 437 34.8
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 5.7e-29 132.9 428 34.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 9.7e-29 132.1 429 32.9
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 4.8e-28 129.8 432 31.9
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.1e-27 128.6 412 33.0
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.4e-27 128.3 419 32.5
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.4e-27 127.5 390 32.3
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.4e-27 127.5 402 32.6
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 4.1e-27 126.7 429 31.7
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.0e-27 125.9 446 33.2
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 7.0e-27 125.9 433 34.9
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.2e-26 125.2 420 33.1
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.2e-26 125.2 458 31.7
Cfa000566 Carpinus fangiana HOM05D038757 ORTHO05D010890 1.2e-26 125.2 285 36.5
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 3.5e-26 123.6 459 33.8
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 4.5e-26 123.2 439 31.2
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 5.0e-25 119.8 455 30.1
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 6.5e-25 119.4 422 36.0
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.1e-24 118.6 418 30.9
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 1.5e-24 118.2 434 32.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.5e-24 117.5 437 31.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 3.2e-24 117.1 450 31.6
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 4.2e-24 116.7 438 31.3
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 7.2e-24 115.9 455 31.0
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.7e-23 114.0 470 31.1
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.7e-23 113.2 420 33.8
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.0e-22 112.1 465 31.0
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 1.4e-22 111.7 422 31.0
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.4e-22 111.7 438 32.9
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 1.8e-22 111.3 428 31.1
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 2.3e-22 110.9 286 37.1
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.3e-22 110.9 414 31.2
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 4.0e-22 110.2 432 31.0
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 6.7e-22 109.4 451 30.4
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.0e-21 107.8 473 30.7
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 2.6e-21 107.5 465 29.9
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 7.5e-21 105.9 439 31.7
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 1.3e-20 105.1 440 31.4
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.7e-20 104.8 429 34.5
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.8e-20 104.0 449 32.7
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.7e-20 103.6 397 30.5
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 3.7e-20 103.6 464 30.4
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.7e-20 103.6 466 29.8
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 4.8e-20 103.2 378 31.0
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 6.3e-20 102.8 441 30.6
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 8.2e-20 102.4 410 32.4
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.1e-19 102.1 424 31.4
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 1.4e-19 101.7 426 30.8
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.2e-18 98.6 445 31.2
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.2e-18 98.6 424 30.0
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 2.7e-18 97.4 431 30.2
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 4.5e-18 96.7 434 29.5
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 5.9e-18 96.3 431 33.4
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.7e-17 94.7 446 30.0
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.7e-17 94.7 449 29.6
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.7e-17 94.7 433 30.7
Atru.chr10.1733 Acer truncatum HOM05D009670 ORTHO05D010890 2.2e-17 94.4 405 29.6
Cpa.g.sc7.22 Carica papaya HOM05D013066 ORTHO05D010890 2.9e-17 94.0 429 28.7
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 5.0e-17 93.2 426 28.9
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 1.1e-16 92.0 245 34.3
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.9e-16 91.3 232 36.6
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.5e-16 90.9 447 29.1
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.5e-16 90.9 431 30.9
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.2e-16 90.5 440 30.5
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.2e-16 90.1 413 29.8
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.4e-16 89.0 390 28.7
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 1.6e-15 88.2 425 28.9
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.6e-15 88.2 390 28.7
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.7e-15 87.4 416 28.8
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.1e-15 86.3 418 29.7
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 8.0e-15 85.9 410 28.8
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.0e-14 85.5 428 29.2
Medtr2g015330 Medicago truncatula HOM05D009670 ORTHO05D010890 1.4e-14 85.1 418 26.8
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.8e-14 84.7 433 28.4
Gohir.A05G157001 Gossypium hirsutum HOM05D013066 ORTHO05D010890 3.0e-14 84.0 433 29.6
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 3.0e-14 84.0 264 32.6
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 4.0e-14 83.6 244 33.2
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 6.8e-14 82.8 430 28.4
Ca_00413_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 6.8e-14 82.8 420 26.9
Ca_30157_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 6.8e-14 82.8 420 26.9
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 6.8e-14 82.8 437 27.2
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 6.8e-14 82.8 460 28.5
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 6.8e-14 82.8 421 29.0
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 8.8e-14 82.4 410 28.3
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 1.2e-13 82.0 435 26.9
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.2e-13 82.0 474 29.3
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.2e-13 82.0 467 27.8
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.0e-13 81.3 416 29.3
Gohir.D05G159900 Gossypium hirsutum HOM05D013066 ORTHO05D010890 3.4e-13 80.5 429 29.6
Lj1g0012311 Lotus japonicus HOM05D009670 ORTHO05D010890 3.4e-13 80.5 435 27.8
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 4.4e-13 80.1 362 28.2
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 5.7e-13 79.7 260 30.4
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 5.7e-13 79.7 407 29.5
VMungo0540G1521 Vigna mungo HOM05D009670 ORTHO05D010890 1.3e-12 78.6 415 28.9
Lalb_Chr18g0059231 Lupinus albus HOM05D009670 ORTHO05D010890 2.2e-12 77.8 391 27.1
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 4.8e-12 76.6 286 32.5
Gohir.D10G030600 Gossypium hirsutum HOM05D013066 ORTHO05D010890 6.3e-12 76.3 432 26.9
Gorai.009G164800 Gossypium raimondii HOM05D013066 ORTHO05D010890 1.1e-11 75.5 429 29.4
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-11 75.5 424 28.5
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 2.4e-11 74.3 461 28.2
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.1e-11 73.9 419 26.5
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 9.1e-11 72.4 432 27.3
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 1.2e-10 72.0 411 28.7
Phvul.006G178900 Phaseolus vulgaris HOM05D009670 ORTHO05D010890 2.7e-10 70.9 416 26.9
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 4.5e-10 70.1 216 35.6
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 7.7e-10 69.3 390 29.7
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 7.7e-10 69.3 403 27.5
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 1.3e-09 68.6 208 33.7
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.7e-09 68.2 259 32.8
THA.LOC104814244 Tarenaya hassleriana HOM05D009294 ORTHO05D011427 1.7e-09 68.2 409 27.9
Gorai.011G032500 Gossypium raimondii HOM05D013066 ORTHO05D010890 2.2e-09 67.8 448 26.1
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.2e-09 67.8 423 26.0
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 2.9e-09 67.4 214 32.7
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 5.0e-09 66.6 219 32.0
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.5e-09 66.2 425 26.6
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 6.5e-09 66.2 430 27.9
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 8.5e-09 65.9 426 27.0
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 8.5e-09 65.9 433 28.6
Medtr4g048110 Medicago truncatula HOM05D009670 ORTHO05D010890 1.9e-08 64.7 415 24.8
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 3.2e-08 63.9 437 26.8
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 5.5e-08 63.2 438 26.5
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 7.2e-08 62.8 417 27.1
Aa31LG9G13830 Aethionema arabicum HOM05D009294 ORTHO05D011427 9.5e-08 62.4 249 29.3
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 9.5e-08 62.4 256 31.6
AT1G29010 Arabidopsis thaliana HOM05D009294 ORTHO05D011427 1.2e-07 62.0 238 29.8
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.2e-07 62.0 205 33.7
CANSAT35G1313 Cannabis sativa HOM05D009670 ORTHO05D010890 1.6e-07 61.6 439 26.9
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.7e-07 60.8 399 27.3
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 4.7e-07 60.1 459 26.8
Lalb_Chr20g0121361 Lupinus albus HOM05D009670 ORTHO05D010890 4.7e-07 60.1 271 27.7
Cfa000563 Carpinus fangiana HOM05D038757 ORTHO05D010890 8.0e-07 59.3 245 29.4
Sabra04G0034300 Salix brachista HOM05D058718 ORTHO05D010890 1.0e-06 58.9 222 32.0
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.3e-06 57.8 223 31.4
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 2.3e-06 57.8 439 26.7
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.0e-06 57.0 468 24.4
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 4.0e-06 57.0 438 26.5
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 4.0e-06 57.0 443 25.5
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 4.0e-06 57.0 293 27.0


User provided reference genes

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