Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17317 Davidia involucrata HOM05D000088 ORTHO05D185741 1.9e-98 362.5 178 100.0
Dinv40568 Davidia involucrata HOM05D000088 ORTHO05D001030 2.6e-23 112.8 131 55.7
Actinidia05641 Actinidia chinensis HOM05D000088 ORTHO05D001030 5.9e-23 111.7 134 52.2
Actinidia01876 Actinidia chinensis HOM05D000088 ORTHO05D001030 6.5e-22 108.2 134 51.5
TAR626G0457 Trochodendron aralioides HOM05D000088 ORTHO05D001030 1.2e-20 104.0 121 52.1
Oeu033909.1 Olea europaea HOM05D000088 ORTHO05D001030 2.1e-20 103.2 105 55.2
Hma1.2p1_0208F.1_g088170 Hydrangea macrophylla HOM05D000088 ORTHO05D001030 4.7e-20 102.1 126 53.2
Lj1C1204T7 Lonicera japonica HOM05D000088 ORTHO05D001030 8.8e-19 97.8 134 46.3
PGSC0003DMG400012813 Solanum tuberosum HOM05D000088 ORTHO05D001030 8.8e-19 97.8 121 50.4
TAR627G0848 Trochodendron aralioides HOM05D000088 ORTHO05D001030 2.6e-18 96.3 152 45.4
Nitab4.5_0005615g0040 Nicotiana tabacum HOM05D000088 ORTHO05D001030 3.3e-18 95.9 115 49.6
QL05p040908 Quercus lobata HOM05D000088 ORTHO05D001030 5.7e-18 95.1 128 47.7
Eucgr.C02199 Eucalyptus grandis HOM05D000088 ORTHO05D001030 7.4e-18 94.7 124 46.8
Potri.005G082200 Populus trichocarpa HOM05D000088 ORTHO05D001030 7.4e-18 94.7 142 40.8
Rhsim02G0130900 Rhododendron simsii HOM05D000088 ORTHO05D001030 7.4e-18 94.7 134 47.8
Rhsim02G0131500 Rhododendron simsii HOM05D000088 ORTHO05D001030 7.4e-18 94.7 134 47.8
vmacro15916 Vaccinium macrocarpon HOM05D000088 ORTHO05D001030 7.4e-18 94.7 125 52.0
MSTRG.14703 Avicennia marina HOM05D000088 ORTHO05D001030 9.7e-18 94.4 98 55.1
Oeu056091.1 Olea europaea HOM05D000088 ORTHO05D001030 9.7e-18 94.4 102 52.9
Actinidia16553 Actinidia chinensis HOM05D000088 ORTHO05D001030 1.7e-17 93.6 87 62.1
CiPaw.09G060600 Carya illinoinensis HOM05D000088 ORTHO05D001030 1.7e-17 93.6 114 51.8
Manes.17G046400 Manihot esculenta HOM05D000088 ORTHO05D001030 1.7e-17 93.6 105 56.2
Nitab4.5_0005090g0040 Nicotiana tabacum HOM05D000088 ORTHO05D001030 1.7e-17 93.6 114 49.1
Sopen03g002410 Solanum pennellii HOM05D000088 ORTHO05D001030 4.8e-17 92.0 121 47.9
ClCG01G023030 Citrullus lanatus HOM05D000088 ORTHO05D001030 8.2e-17 91.3 100 52.0
Oeu005079.1 Olea europaea HOM05D000088 ORTHO05D001030 2.4e-16 89.7 99 52.5
Solyc03g006400.3 Solanum lycopersicum HOM05D000088 ORTHO05D001030 2.4e-16 89.7 105 50.5
Cfa000482 Carpinus fangiana HOM05D000088 ORTHO05D001030 3.1e-16 89.4 126 48.4
CsaV3_6G050160 Cucumis sativus L. HOM05D000088 ORTHO05D001030 4.1e-16 89.0 99 51.5
Oeu064780.1 Olea europaea HOM05D000088 ORTHO05D001030 4.1e-16 89.0 100 52.0
Haze_06434 Corylus avellana HOM05D000088 ORTHO05D001030 9.1e-16 87.8 125 48.0
TWI63G0890 Tripterygium wilfordii HOM05D000088 ORTHO05D001030 9.1e-16 87.8 139 46.0
COL.COLO4_31459 Corchorus olitorius HOM05D000088 ORTHO05D001030 1.2e-15 87.4 103 52.4
MELO3C007280.2 Cucumis melo HOM05D000088 ORTHO05D001030 1.2e-15 87.4 99 50.5
Ciclev10015051m.g Citrus clementina HOM05D000088 ORTHO05D001030 1.5e-15 87.0 101 53.5
Nn1g06507 Nelumbo nucifera HOM05D000088 ORTHO05D001030 1.5e-15 87.0 125 47.2
TWI38G1564 Tripterygium wilfordii HOM05D000088 ORTHO05D001030 1.5e-15 87.0 139 43.9
MSTRG.13197 Avicennia marina HOM05D000088 ORTHO05D001030 2.0e-15 86.7 99 50.5
CAN.G289.52 Capsicum annuum HOM05D000088 ORTHO05D001030 2.0e-15 86.7 116 47.4
TWI38G0155 Tripterygium wilfordii HOM05D000088 ORTHO05D001030 2.6e-15 86.3 137 44.5
FAN21G0908 Fragaria x ananassa HOM05D000088 ORTHO05D001030 5.9e-15 85.1 141 42.6
Peaxi162Scf00461g00610 Petunia axillaris HOM05D000088 ORTHO05D001030 1.0e-14 84.3 110 49.1
CSS0044090 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D001030 2.9e-14 82.8 118 44.1
CAN.G1164.46 Capsicum annuum HOM05D000088 ORTHO05D001030 2.9e-14 82.8 94 50.0
RcHm_v2.0_Chr5g0008571 Rosa chinensis HOM05D000088 ORTHO05D001030 2.9e-14 82.8 144 44.4
FAN16G2658 Fragaria x ananassa HOM05D000088 ORTHO05D001030 3.8e-14 82.4 141 42.6
Atru.chr10.1866 Acer truncatum HOM05D000088 ORTHO05D001030 5.0e-14 82.0 100 56.0
Sabra05G0067000 Salix brachista HOM05D000088 ORTHO05D001030 6.5e-14 81.6 156 36.5
Sc05g0007640 Simmondsia chinensis HOM05D000088 ORTHO05D001030 6.5e-14 81.6 104 51.9
Aa31LG1G11660 Aethionema arabicum HOM05D000088 ORTHO05D001030 8.5e-14 81.3 149 38.3
Manes.16G028700 Manihot esculenta HOM05D000088 ORTHO05D001030 8.5e-14 81.3 104 47.1
Glyma.13G238400 Glycine max HOM05D000088 ORTHO05D001030 1.1e-13 80.9 96 52.1
Nn1g04110 Nelumbo nucifera HOM05D000088 ORTHO05D001030 1.4e-13 80.5 100 52.0
Sed0020942 Sechium edule HOM05D000088 ORTHO05D001030 1.4e-13 80.5 101 48.5
Cpa.g.sc27.34 Carica papaya HOM05D000088 ORTHO05D001030 1.9e-13 80.1 122 45.1
Duzib160G0792 Durio zibethinus HOM05D000088 ORTHO05D001030 1.9e-13 80.1 103 48.5
PGSC0003DMG400029693 Solanum tuberosum HOM05D000088 ORTHO05D001030 1.9e-13 80.1 92 48.9
DCAR_004072 Daucus carota HOM05D000088 ORTHO05D001030 2.5e-13 79.7 125 41.6
FAN25G2168 Fragaria x ananassa HOM05D000088 ORTHO05D001030 2.5e-13 79.7 162 37.7
CiPaw.10G049500 Carya illinoinensis HOM05D000088 ORTHO05D001030 4.2e-13 79.0 123 44.7
VMungo0251G0896 Vigna mungo HOM05D000088 ORTHO05D001030 4.2e-13 79.0 87 52.9
Thhalv10013257m.g Eutrema salsugineum HOM05D000088 ORTHO05D001030 5.5e-13 78.6 153 35.9
Prupe.4G048400 Prunus persica HOM05D000088 ORTHO05D001030 5.5e-13 78.6 143 42.0
Sopen02g022970 Solanum pennellii HOM05D000088 ORTHO05D001030 5.5e-13 78.6 92 47.8
Glyma.07G197200 Glycine max HOM05D000088 ORTHO05D001030 7.2e-13 78.2 97 52.6
Potri.007G085300 Populus trichocarpa HOM05D000088 ORTHO05D001030 7.2e-13 78.2 124 41.9
FvH4_3g09060 Fragaria vesca HOM05D000088 ORTHO05D001030 9.4e-13 77.8 162 37.0
FAN11G3049 Fragaria x ananassa HOM05D000088 ORTHO05D001030 9.4e-13 77.8 162 37.0
Glyma.13G179000 Glycine max HOM05D000088 ORTHO05D001030 1.2e-12 77.4 89 55.1
Solyc02g078140.3 Solanum lycopersicum HOM05D000088 ORTHO05D001030 1.2e-12 77.4 92 47.8
TAR624G0474 Trochodendron aralioides HOM05D000088 ORTHO05D001030 1.2e-12 77.4 120 47.5
Duzib235G1013 Durio zibethinus HOM05D000088 ORTHO05D001030 1.6e-12 77.0 136 39.7
Sabra07G0070600 Salix brachista HOM05D000088 ORTHO05D001030 2.1e-12 76.6 124 41.9
PGR044G0937 Punica granatum HOM05D000088 ORTHO05D001030 2.7e-12 76.3 132 43.2
Thecc.06G186200 Theobroma cacao HOM05D000088 ORTHO05D001030 2.7e-12 76.3 136 38.2
Lalb_Chr20g0121841 Lupinus albus HOM05D000088 ORTHO05D001030 3.6e-12 75.9 129 42.6
arahy.Tifrunner.gnm1.ann1.9HZ6ZU Arachis hypogaea HOM05D000088 ORTHO05D001030 6.1e-12 75.1 111 47.7
Lalb_Chr15g0089801 Lupinus albus HOM05D000088 ORTHO05D001030 6.1e-12 75.1 96 51.0
Duzib192G1025 Durio zibethinus HOM05D000088 ORTHO05D001030 8.0e-12 74.7 135 39.3
Phvul.002G229000 Phaseolus vulgaris HOM05D000088 ORTHO05D001030 8.0e-12 74.7 89 52.8
SalBow7G0806 Salvia bowleyana HOM05D000088 ORTHO05D001030 8.0e-12 74.7 92 52.2
CARHR272890 Cardamine hirsuta HOM05D000088 ORTHO05D001030 1.0e-11 74.3 147 35.4
TPR.G31170 Trifolium pratense HOM05D000088 ORTHO05D001030 1.0e-11 74.3 134 41.8
Migut.H01484 Erythranthe guttata HOM05D000088 ORTHO05D001030 1.8e-11 73.6 121 42.1
THA.LOC104799407 Tarenaya hassleriana HOM05D000088 ORTHO05D001030 1.8e-11 73.6 121 41.3
Glyma.15G074900 Glycine max HOM05D000088 ORTHO05D001030 2.3e-11 73.2 96 51.0
Hund21220 Selenicereus undatus HOM05D000088 ORTHO05D001030 3.0e-11 72.8 101 45.5
arahy.Tifrunner.gnm1.ann1.3T59BH Arachis hypogaea HOM05D000088 ORTHO05D001030 3.9e-11 72.4 109 46.8
Lj4g0016457 Lotus japonicus HOM05D000088 ORTHO05D001030 3.9e-11 72.4 127 42.5
Lalb_Chr05g0218491 Lupinus albus HOM05D000088 ORTHO05D001030 3.9e-11 72.4 97 48.5
BcaB05g22462 Brassica carinata HOM05D000088 ORTHO05D001030 5.2e-11 72.0 141 34.8
BolC2t07412H Brassica oleracea HOM05D000088 ORTHO05D001030 5.2e-11 72.0 135 36.3
MD05G1338300 Malus domestica HOM05D000088 ORTHO05D001030 6.7e-11 71.6 148 38.5
Medtr4g088750 Medicago truncatula HOM05D000088 ORTHO05D001030 8.8e-11 71.2 88 46.6
A03p11960 Brassica napus HOM05D000088 ORTHO05D001030 1.1e-10 70.9 127 39.4
DCAR_008037 Daucus carota HOM05D000088 ORTHO05D001030 1.1e-10 70.9 113 43.4
BcaC03g14065 Brassica carinata HOM05D000088 ORTHO05D001030 1.5e-10 70.5 133 36.1
C02p13000 Brassica napus HOM05D000088 ORTHO05D001030 1.5e-10 70.5 133 36.1
Gohir.A05G161300 Gossypium hirsutum HOM05D000088 ORTHO05D001030 1.5e-10 70.5 124 37.9
Gorai.009G169300 Gossypium raimondii HOM05D000088 ORTHO05D001030 1.5e-10 70.5 125 37.6
Psat7g114120 Pisum sativum HOM05D000088 ORTHO05D001030 1.5e-10 70.5 75 52.0
Sp6g20650 Schrenkiella parvula HOM05D000088 ORTHO05D001030 2.0e-10 70.1 154 34.4
C03p14050 Brassica napus HOM05D000088 ORTHO05D001030 3.3e-10 69.3 126 38.9
Gohir.A10G026400 Gossypium hirsutum HOM05D000088 ORTHO05D001030 3.3e-10 69.3 127 39.4
Lj1A1189T65 Lonicera japonica HOM05D000088 ORTHO05D001030 3.3e-10 69.3 152 36.2
BcaB01g04626 Brassica carinata HOM05D000088 ORTHO05D001030 4.4e-10 68.9 126 41.3
Carub.0008s1959 Capsella rubella HOM05D000088 ORTHO05D001030 4.4e-10 68.9 90 44.4
Gohir.D10G027000 Gossypium hirsutum HOM05D000088 ORTHO05D001030 4.4e-10 68.9 127 39.4
arahy.Tifrunner.gnm1.ann1.IXF0I4 Arachis hypogaea HOM05D000088 ORTHO05D001030 5.7e-10 68.6 96 47.9
Ca_18550_v3 Cicer arietinum L. HOM05D000088 ORTHO05D001030 5.7e-10 68.6 88 45.5
AL139U10040 Arabidopsis lyrata HOM05D000088 ORTHO05D001030 7.4e-10 68.2 155 32.9
AL8G35330 Arabidopsis lyrata HOM05D000088 ORTHO05D001030 7.4e-10 68.2 155 32.3
BolC3t13852H Brassica oleracea HOM05D000088 ORTHO05D001030 7.4e-10 68.2 126 40.5
BraA02t05822Z Brassica rapa HOM05D000088 ORTHO05D001030 9.7e-10 67.8 131 35.9
HanXRQChr17g0560191 Helianthus annuus HOM05D000088 ORTHO05D001030 9.7e-10 67.8 108 41.7
A02p07440 Brassica napus HOM05D000088 ORTHO05D001030 1.3e-09 67.4 129 36.4
BraA03t10507Z Brassica rapa HOM05D000088 ORTHO05D001030 1.3e-09 67.4 127 39.4
CANSAT35G0486 Cannabis sativa HOM05D000088 ORTHO05D001030 1.3e-09 67.4 117 43.6
AL3G40420 Arabidopsis lyrata HOM05D000088 ORTHO05D001030 1.7e-09 67.0 90 43.3
AT5G58950 Arabidopsis thaliana HOM05D000088 ORTHO05D001030 1.7e-09 67.0 156 33.3
arahy.Tifrunner.gnm1.ann1.H0TFP9 Arachis hypogaea HOM05D000088 ORTHO05D001030 1.7e-09 67.0 96 46.9
Sp5g14810 Schrenkiella parvula HOM05D000088 ORTHO05D001030 2.2e-09 66.6 154 35.7
Gorai.011G028300 Gossypium raimondii HOM05D000088 ORTHO05D001030 3.7e-09 65.9 127 38.6
Ca_00341_v3 Cicer arietinum L. HOM05D000088 ORTHO05D001030 8.2e-09 64.7 120 42.5
Medtr2g013900 Medicago truncatula HOM05D000088 ORTHO05D001030 8.2e-09 64.7 98 48.0
BraA10t43700Z Brassica rapa HOM05D000088 ORTHO05D001030 1.1e-08 64.3 93 43.0
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 1.1e-08 64.3 115 39.1
HanXRQChr10g0303941 Helianthus annuus HOM05D000088 ORTHO05D001030 1.1e-08 64.3 108 38.9
Lalb_Chr09g0327671 Lupinus albus HOM05D000088 ORTHO05D001030 1.1e-08 64.3 96 45.8
AT3G46930 Arabidopsis thaliana HOM05D000088 ORTHO05D001030 1.4e-08 63.9 118 40.7
Thhalv10010300m.g Eutrema salsugineum HOM05D000088 ORTHO05D001030 2.4e-08 63.2 141 35.5
Hund23755 Selenicereus undatus HOM05D000185 ORTHO05D001030 2.4e-08 63.2 125 36.0
A10p15320 Brassica napus HOM05D000088 ORTHO05D001030 3.1e-08 62.8 91 41.8
Lsat_1_v5_gn_4_53520 Lactuca sativa HOM05D000088 ORTHO05D001030 4.1e-08 62.4 108 38.0
EL10Ac8g20388 Beta vulgaris HOM05D000088 ORTHO05D001030 5.3e-08 62.0 103 40.8
PSO832G4333 Papaver somniferum HOM05D000088 ORTHO05D001030 5.3e-08 62.0 95 44.2
Carub.0005s1315 Capsella rubella HOM05D000088 ORTHO05D001030 1.2e-07 60.8 132 39.4
MBI07_g30187_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D001030 1.2e-07 60.8 136 35.3
Sed0022771 Sechium edule HOM05D000088 ORTHO05D001030 1.2e-07 60.8 109 40.4
FAN02G3923 Fragaria x ananassa HOM05D000088 ORTHO05D001030 1.6e-07 60.5 76 50.0
Phvul.006G184700 Phaseolus vulgaris HOM05D000088 ORTHO05D001030 2.0e-07 60.1 96 43.8
PSO063G7650 Papaver somniferum HOM05D000088 ORTHO05D001030 3.5e-07 59.3 94 43.6
AL5G26150 Arabidopsis lyrata HOM05D000088 ORTHO05D001030 4.5e-07 58.9 86 46.5
CsaV3_1G012360 Cucumis sativus L. HOM05D000088 ORTHO05D001030 4.5e-07 58.9 99 43.4
FvH4_6g03850 Fragaria vesca HOM05D000088 ORTHO05D001030 4.5e-07 58.9 86 46.5
FAN14G3484 Fragaria x ananassa HOM05D000088 ORTHO05D001030 4.5e-07 58.9 86 46.5
FAN14G4255 Fragaria x ananassa HOM05D000088 ORTHO05D001030 4.5e-07 58.9 86 46.5
Cc02_g13450 Coffea canephora HOM05D000088 ORTHO05D001030 5.9e-07 58.5 134 39.6
MD10G1293400 Malus domestica HOM05D000088 ORTHO05D001030 7.7e-07 58.2 146 34.9
Psat1g204600 Pisum sativum HOM05D000088 ORTHO05D001030 7.7e-07 58.2 89 43.8
VMungo0540G2246 Vigna mungo HOM05D000088 ORTHO05D001030 7.7e-07 58.2 69 53.6
DCAR_006576 Daucus carota HOM05D000088 ORTHO05D001030 1.3e-06 57.4 74 45.9
Sed0000648 Sechium edule HOM05D000088 ORTHO05D001030 1.3e-06 57.4 121 36.4
FAN05G4442 Fragaria x ananassa HOM05D000088 ORTHO05D001030 1.7e-06 57.0 76 47.4
Nitab4.5_0012662g0010 Nicotiana tabacum HOM05D000088 ORTHO05D001030 1.7e-06 57.0 98 38.8
Sed0020551 Sechium edule HOM05D000088 ORTHO05D001030 1.7e-06 57.0 113 38.1
Aqoxy1G02400 Aquilegia oxysepala HOM05D000088 ORTHO05D001030 2.2e-06 56.6 87 46.0
AUR62014827 Chenopodium quinoa HOM05D000088 ORTHO05D001030 2.2e-06 56.6 81 45.7
FAN09G0071 Fragaria x ananassa HOM05D000088 ORTHO05D001030 2.2e-06 56.6 76 47.4
PSO210G4181 Papaver somniferum HOM05D000088 ORTHO05D001030 2.2e-06 56.6 95 38.9
BcaB08g36311 Brassica carinata HOM05D000088 ORTHO05D001030 2.9e-06 56.2 55 58.2
Aa31LG4G15880 Aethionema arabicum HOM05D000088 ORTHO05D001030 6.5e-06 55.1 134 35.1
Lj6g0016760 Lotus japonicus HOM05D000088 ORTHO05D001030 6.5e-06 55.1 66 54.5
RcHm_v2.0_Chr3g0452421 Rosa chinensis HOM05D000088 ORTHO05D001030 6.5e-06 55.1 87 46.0
MBI06_g43062_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D001030 8.5e-06 54.7 69 50.7


User provided reference genes

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