Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.1e-174 615.5 294 100.0
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-116 423.7 271 76.0
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 4.3e-39 166.0 230 42.6
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 3.0e-32 143.3 143 53.8
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 3.0e-32 143.3 137 55.5
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 3.1e-21 106.7 219 31.1
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.5e-15 87.8 361 23.0
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.3e-15 86.7 277 24.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 4.4e-15 86.3 377 22.0
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 7.4e-15 85.5 380 21.8
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 8.2e-14 82.0 370 21.6
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-13 80.1 282 23.0
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-13 80.1 282 23.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 4.1e-13 79.7 356 22.2
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.1e-13 79.7 314 22.3
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 7.0e-13 79.0 159 34.0
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.6e-12 77.8 84 44.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.6e-12 77.8 84 44.0
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.6e-12 77.0 110 37.3
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.6e-12 77.0 110 37.3
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.6e-12 77.0 110 37.3
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.6e-12 77.0 133 34.6
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.5e-12 76.6 87 42.5
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 3.5e-12 76.6 400 18.8
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.5e-12 76.3 121 36.4
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 4.5e-12 76.3 390 20.5
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 5.9e-12 75.9 373 20.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.7e-12 75.5 84 42.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.0e-11 75.1 87 40.2
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.0e-11 75.1 106 36.8
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.3e-11 74.7 84 41.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.3e-11 74.7 146 32.9
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.3e-11 74.7 87 40.2
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.7e-11 74.3 87 39.1
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.7e-11 74.3 87 41.4
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.2e-11 73.9 110 36.4
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.2e-11 73.9 87 41.4
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 2.9e-11 73.6 103 36.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 2.9e-11 73.6 157 33.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.9e-11 73.6 83 41.0
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.9e-11 73.6 358 21.8
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 3.8e-11 73.2 91 39.6
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.8e-11 73.2 91 39.6
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.8e-11 73.2 91 39.6
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.8e-11 73.2 91 39.6
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.0e-11 72.8 128 32.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 5.0e-11 72.8 194 26.3
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 5.0e-11 72.8 87 40.2
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 6.5e-11 72.4 93 39.8
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 6.5e-11 72.4 91 39.6
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 6.5e-11 72.4 91 39.6
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 6.5e-11 72.4 92 39.1
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 8.5e-11 72.0 87 41.4
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.1e-10 71.6 106 37.7
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.1e-10 71.6 114 34.2
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.1e-10 71.6 114 34.2
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.5e-10 71.2 85 40.0
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.5e-10 71.2 383 20.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.9e-10 70.9 89 39.3
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.9e-10 70.9 89 39.3
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.9e-10 70.9 96 39.6
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.5e-10 70.5 83 39.8
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 2.5e-10 70.5 87 39.1
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.5e-10 70.5 389 19.3
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.5e-10 70.5 368 20.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.5e-10 70.5 114 31.6
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 3.2e-10 70.1 92 40.2
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 3.2e-10 70.1 92 40.2
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 3.2e-10 70.1 96 36.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 3.2e-10 70.1 199 29.1
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 3.2e-10 70.1 87 39.1
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 3.2e-10 70.1 256 22.3
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 3.2e-10 70.1 100 34.0
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 4.2e-10 69.7 102 35.3
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 4.2e-10 69.7 92 40.2
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 4.2e-10 69.7 194 25.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.2e-10 69.7 145 30.3
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 4.2e-10 69.7 58 50.0
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 4.2e-10 69.7 87 40.2
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 5.5e-10 69.3 339 20.1
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 5.5e-10 69.3 102 34.3
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 5.5e-10 69.3 93 36.6
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 5.5e-10 69.3 93 36.6
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 5.5e-10 69.3 87 36.8
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 5.5e-10 69.3 53 52.8
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 7.2e-10 68.9 92 40.2
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 7.2e-10 68.9 96 37.5
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 9.4e-10 68.6 89 37.1
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 9.4e-10 68.6 93 36.6
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 9.4e-10 68.6 85 38.8
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 9.4e-10 68.6 359 20.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.2e-09 68.2 90 38.9
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.2e-09 68.2 85 38.8
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.2e-09 68.2 85 38.8
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-09 68.2 87 39.1
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.2e-09 68.2 87 39.1
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.2e-09 68.2 88 42.0
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.6e-09 67.8 87 37.9
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.6e-09 67.8 85 41.2
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.1e-09 67.4 92 38.0
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.1e-09 67.4 82 40.2
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.1e-09 67.4 54 48.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.1e-09 67.4 82 37.8
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.1e-09 67.4 111 35.1
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.1e-09 67.4 87 36.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.7e-09 67.0 87 36.8
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.6e-09 66.6 372 20.4
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.7e-09 66.2 82 37.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 4.7e-09 66.2 89 36.0
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 6.1e-09 65.9 81 35.8
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 6.1e-09 65.9 90 37.8
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 8.0e-09 65.5 89 37.1
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 8.0e-09 65.5 89 37.1
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.0e-08 65.1 87 37.9
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.0e-08 65.1 87 35.6
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.4e-08 64.7 84 33.3
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.4e-08 64.7 88 45.5
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.8e-08 64.3 54 48.1
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 4.0e-08 63.2 92 37.0
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.0e-08 63.2 93 34.4
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 5.2e-08 62.8 87 36.8
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 8.8e-08 62.0 52 44.2
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 8.8e-08 62.0 87 35.6
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 8.8e-08 62.0 54 44.4
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 8.8e-08 62.0 78 39.7
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 8.8e-08 62.0 78 39.7
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.5e-07 61.2 86 34.9
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.3e-07 60.1 52 42.3
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.3e-07 60.1 52 42.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 5.7e-07 59.3 53 43.4
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 7.5e-07 58.9 82 37.8
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 9.7e-07 58.5 122 31.1
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.3e-06 58.2 53 43.4
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-06 57.4 53 47.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-06 57.4 53 47.2
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-06 57.0 102 38.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-06 57.0 102 38.2
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.8e-06 57.0 82 36.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.3e-06 55.8 53 43.4
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.2e-06 55.5 52 38.5
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.2e-06 55.5 52 38.5


User provided reference genes

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